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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFB290
Library AF
(Link to library)
Clone ID AFB290
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15642-1
Original site URL
Representative seq. ID AFB290P
(Link to Original site)
Representative DNA sequence 
>AFB290 (AFB290Q) /CSM/AF/AFB2-D/AFB290Q.Seq.d/
AACAATAAAATAATACCNAATTAAATTACAATAAATAATAAAAAAAAAAATATGTTAGAT
TTTTTCCATTTAAAAGACGTAGATGAATTTTTTAGACTTTTGGAAAAGAAGAATTTACAA
AACCTAGATAACCNGATTGATGGACCNGGAAACCTCAATTGGNGAACCACTTATACAGAA
AAAGATTTTTCCAAAGTTCCTAAATTCAGGGGTATCATTCATATCGNGCAAATTAGAGAT
TTAGGAACAAAGATTCATAGAGATCTATTGTNTGAAATAATGTTTGAAAAACTATTAXXX
XXXXXXXAAAANGGTGAAAATTTTATTATTGAAATTCCCCAAGAAGAAGNTNANCNAAAA
AGAGNATAAAAAAGAAGAAGGNTAAGAAANAAGATNANCAAGAANAAGATAANCCAAAAG
AAGAAAAACTANAAGATNAACAAAAAAATGGTGAAGAATTTATTATTGAAATTCCNCAAA
ATGAAACTTTAGAAATTAAAGTTGATACACACCCAAGGTCTTCCAATGATGATGTATNTA
CTGCANANATGGAAGTTNAAGCATTGAAAACACCATTGTTTGCTGAAACTACATTTGTAA
CAAAACAACAAGTAATCACAAATAAAAAGCTATTGGTGTACAAACAAAGTGATTTCTTTC
CAAATATGACAACATTATTACAAAGTAGATTGAAAGATGTAACAGTCCAANAAGTAAAAG
ACCTTACTAAAATTGGGTTAAATGATAATAGCTATAGTGTAGGTGATTTTGAAAATGTTT
TTGTATTATATGCTGTCTCTTGTATGGGTGCTAGAACTGATTCCGAAANAGATGCTTTCA
AAATTAAATCAATTCGTTCAATAATTGGTGACAAAGTTCCAATCATCTATGGTGNATTTA
TGATTGGAAAGAATGGACCAACTAGAATTAAAGTTGAACATACTCAAACCTCTATCTCAA
TCACTCATTCAATGAGTGATATCGGTCGTAATTTACAAAATAATGAAAATTTAAAACAAC
TACAATCNTTTTTACAACAATNAATATTAAAAAATAAAAAAATAAAAAAAAAACATCTAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nnkiipn*ITINNKKKNMLDFFHLKDVDEFFRLLEKKNLQNLDNXIDGPGNLNWXTTYTE
KDFSKVPKFRGIIHIXQIRDLGTKIHRDLLXEIMFEKLL---

---KXVKILLLKFPKKKXXXKEXKKEEG*exrxxrxr*xkrrktxrxtkkw*riyy*nsx
k*nfrn*s*ytpkvfq**cxycxxgsxsientivc*nyicnkttsnhk*kaigvqtk*fl
skydniitk*iercnspxskrpy*nwvk***l*cr*f*kcfciiccllygc*n*frxrcf
qn*insfnnw*qssnhlwxiydwkewtn*n*s*tysnlylnhsfne*yrs*ftk**kfkt
ttixfttxnikk*knkkkts
Translated Amino Acid sequence (All Frames) 
Frame A:
nnkiipn*ITINNKKKNMLDFFHLKDVDEFFRLLEKKNLQNLDNXIDGPGNLNWXTTYTE
KDFSKVPKFRGIIHIXQIRDLGTKIHRDLLXEIMFEKLL---

---KXVKILLLKFPKKKXXXKEXKKEEG*exrxxrxr*xkrrktxrxtkkw*riyy*nsx
k*nfrn*s*ytpkvfq**cxycxxgsxsientivc*nyicnkttsnhk*kaigvqtk*fl
skydniitk*iercnspxskrpy*nwvk***l*cr*f*kcfciiccllygc*n*frxrcf
qn*insfnnw*qssnhlwxiydwkewtn*n*s*tysnlylnhsfne*yrs*ftk**kfkt
ttixfttxnikk*knkkkts

Frame B:
tik*yxiklq*iikkkic*ifsi*kt*mnfldfwkrriykt*itxlmdxetsigepliqk
kifpkflnsgvsfisxklei*eqrfieiycxk*clkny---

---kx*kfyy*nsprrxxxkkxikkkkxkkxdxqexdxpkeeklxdxqkngeefiieipq
netleikvdthprssnddvxtaxmevxalktplfaettfvtkqqvitnkkllvykqsdff
pnmttllqsrlkdvtvqxvkdltkiglndnsysvgdfenvfvlyavscmgartdsexdaf
kiksirsiigdkvpiiygxfmigkngptrikvehtqtsisithsmsdigrnlqnnenlkq
lqsflqqxilknkkikkkhl

Frame C:
q*nntxlnynk**kkkyvrffpfkrrr*if*tfgkeeftkpr*pd*wtxkpqlxnhlyrk
rffqss*iqgyhsyran*rfrnkds*rsiv*nnv*kti---

---xgenfiieipqeexxxkrx*krrrxrxkxxkxkixqkkknxkxnkkmvknlllkfxk
mkl*klklihtqglpmmmyxlxxwkxkh*khhcllklhl*qnnk*sqiksywctnkvisf
qi*qhyykvd*km*qsxk*ktllklg*miiaiv*vilkmflyymlslvwvlelipkxmls
klnqfvq*lvtkfqssmvxl*lermdqlelklnilkplsqsliq*visvviykimki*nn
ynxfynnxy*kikk*kkniy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFF805 (SFF805Q) /CSM/SF/SFF8-A/SFF805Q.Seq.d/                       1029   0.0
CHD715 (CHD715Q) /CSM/CH/CHD7-A/CHD715Q.Seq.d/                       1029   0.0
AFN813 (AFN813Q) /CSM/AF/AFN8-A/AFN813Q.Seq.d/                       1029   0.0
AFK553 (AFK553Q) /CSM/AF/AFK5-C/AFK553Q.Seq.d/                       1029   0.0
AFK243 (AFK243Q) /CSM/AF/AFK2-B/AFK243Q.Seq.d/                       1029   0.0
AFC809 (AFC809Q) /CSM/AF/AFC8-A/AFC809Q.Seq.d/                       1029   0.0
AFB290 (AFB290Q) /CSM/AF/AFB2-D/AFB290Q.Seq.d/                       1029   0.0
AFG134 (AFG134Q) /CSM/AF/AFG1-B/AFG134Q.Seq.d/                       1023   0.0
AFB606 (AFB606Q) /CSM/AF/AFB6-A/AFB606Q.Seq.d/                       1023   0.0
SFJ241 (SFJ241Q) /CSM/SF/SFJ2-B/SFJ241Q.Seq.d/                       1021   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL805899|AL805899.20 Mouse DNA sequence from clone RP23-400P11 on chromosome 4.    42  0.007  2
BX255927|BX255927.3 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP24-87C23.    42  0.045  3
AC098490|AC098490.5 Rattus norvegicus clone CH230-15D5, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.90  1
AL071840|AL071840.1 Drosophila melanogaster genome survey sequence T7 end of BAC #  BACR27E01 of RPCI-98 library from Drosophila melanogaster (fruit  fly).    46  0.90  1
BX005417|BX005417.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-240N22.    42  1.2  3
AP004629|AP004629.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 3, clone:LjT07I01b, TM0091b.    38  1.5  2
N46543|N46543.1 yy47e02.r1 Soares_multiple_sclerosis_2NbHMSP Homo sapiens cDNA clone IMAGE:276698 5', mRNA sequence.    38  1.5  2
Z38164|Z38164.1 H. sapiens partial cDNA sequence; clone c-01f02.    38  1.6  2
G05638|G05638.1 human STS WI-6167, sequence tagged site.          38  1.6  2
AW192379|AW192379.1 xl82h01.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone IMAGE:2681233 3', mRNA sequence.    38  1.9  2
dna update 2003. 7.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU466930_657(CU466930|pid:none) Candidatus Cloacamonas acidamino...    36   1.9
DQ438985_1(DQ438985|pid:none) Planococcus sp. ZOYM plasmid pPCZ2...    35   3.3
AL844508_260(AL844508|pid:none) Plasmodium falciparum strain 3D7...    35   4.3
A48440(A48440)ring-infected erythrocyte surface antigen 2, RESA-...    35   5.6
protein update 2009. 3.26
PSORT 

 psg: 0.75  gvh: 0.21  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.21  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for AFB290 is nuc
5' end seq. ID AFB290F
5' end seq. 
>AFB290F.Seq
AACAATAAAATAATACCNAATTAAATTACAATAAATAATAAAAAAAAAAATATGTTAGAT
TTTTTCCATTTAAAAGACGTAGATGAATTTTTTAGACTTTTGGAAAAGAAGAATTTACAA
AACCTAGATAACCNGATTGATGGACCNGGAAACCTCAATTGGNGAACCACTTATACAGAA
AAAGATTTTTCCAAAGTTCCTAAATTCAGGGGTATCATTCATATCGNGCAAATTAGAGAT
TTAGGAACAAAGATTCATAGAGATCTATTGTNTGAAATAATGTTTGAAAAACTATTA---
-------
Length of 5' end seq. 297
3' end seq. ID AFB290Z
3' end seq. 
>AFB290Z.Seq
----------AAAANGGTGAAAATTTTATTATTGAAATTCCCCAAGAAGAAGNTNANCNA
AAAAGAGNATAAAAAAGAAGAAGGNTAAGAAANAAGATNANCAAGAANAAGATAANCCAA
AAGAAGAAAAACTANAAGATNAACAAAAAAATGGTGAAGAATTTATTATTGAAATTCCNC
AAAATGAAACTTTAGAAATTAAAGTTGATACACACCCAAGGTCTTCCAATGATGATGTAT
NTACTGCANANATGGAAGTTNAAGCATTGAAAACACCATTGTTTGCTGAAACTACATTTG
TAACAAAACAACAAGTAATCACAAATAAAAAGCTATTGGTGTACAAACAAAGTGATTTCT
TTCCAAATATGACAACATTATTACAAAGTAGATTGAAAGATGTAACAGTCCAANAAGTAA
AAGACCTTACTAAAATTGGGTTAAATGATAATAGCTATAGTGTAGGTGATTTTGAAAATG
TTTTTGTATTATATGCTGTCTCTTGTATGGGTGCTAGAACTGATTCCGAAANAGATGCTT
TCAAAATTAAATCAATTCGTTCAATAATTGGTGACAAAGTTCCAATCATCTATGGTGNAT
TTATGATTGGAAAGAATGGACCAACTAGAATTAAAGTTGAACATACTCAAACCTCTATCT
CAATCACTCATTCAATGAGTGATATCGGTCGTAATTTACAAAATAATGAAAATTTAAAAC
AACTACAATCNTTTTTACAACAATNAATATTAAAAAATAAAAAAATAAAAAAAAAACATC
TAT
Length of 3' end seq. 773
Connected seq. ID AFB290P
Connected seq. 
>AFB290P.Seq
AACAATAAAATAATACCNAATTAAATTACAATAAATAATAAAAAAAAAAATATGTTAGAT
TTTTTCCATTTAAAAGACGTAGATGAATTTTTTAGACTTTTGGAAAAGAAGAATTTACAA
AACCTAGATAACCNGATTGATGGACCNGGAAACCTCAATTGGNGAACCACTTATACAGAA
AAAGATTTTTCCAAAGTTCCTAAATTCAGGGGTATCATTCATATCGNGCAAATTAGAGAT
TTAGGAACAAAGATTCATAGAGATCTATTGTNTGAAATAATGTTTGAAAAACTATTA---
-------AAAANGGTGAAAATTTTATTATTGAAATTCCCCAAGAAGAAGNTNANCNAAAA
AGAGNATAAAAAAGAAGAAGGNTAAGAAANAAGATNANCAAGAANAAGATAANCCAAAAG
AAGAAAAACTANAAGATNAACAAAAAAATGGTGAAGAATTTATTATTGAAATTCCNCAAA
ATGAAACTTTAGAAATTAAAGTTGATACACACCCAAGGTCTTCCAATGATGATGTATNTA
CTGCANANATGGAAGTTNAAGCATTGAAAACACCATTGTTTGCTGAAACTACATTTGTAA
CAAAACAACAAGTAATCACAAATAAAAAGCTATTGGTGTACAAACAAAGTGATTTCTTTC
CAAATATGACAACATTATTACAAAGTAGATTGAAAGATGTAACAGTCCAANAAGTAAAAG
ACCTTACTAAAATTGGGTTAAATGATAATAGCTATAGTGTAGGTGATTTTGAAAATGTTT
TTGTATTATATGCTGTCTCTTGTATGGGTGCTAGAACTGATTCCGAAANAGATGCTTTCA
AAATTAAATCAATTCGTTCAATAATTGGTGACAAAGTTCCAATCATCTATGGTGNATTTA
TGATTGGAAAGAATGGACCAACTAGAATTAAAGTTGAACATACTCAAACCTCTATCTCAA
TCACTCATTCAATGAGTGATATCGGTCGTAATTTACAAAATAATGAAAATTTAAAACAAC
TACAATCNTTTTTACAACAATNAATATTAAAAAATAAAAAAATAAAAAAAAAACATCTAT
Length of connected seq. 1070
Full length Seq ID -
Full length Seq. -
Length of full length seq. -