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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ890
Library SL
(Link to library)
Clone ID SLJ890
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16135-1
Original site URL
Representative seq. ID SLJ890E
(Link to Original site)
Representative DNA sequence 
>SLJ890 (SLJ890Q) /CSM/SL/SLJ8-D/SLJ890Q.Seq.d/
CTTTTATCATCAGATGAACTCGCAAATGTTCCATTCCTCATTCTTGGTAATAAAGTTGAT
ATTGGTAATACATCAGAAGAGAAATTCAGAGCATCATTAGGTCTCACTCAAACTACAGGT
AAAGGTAAAACTACACTCAATGGTGTTAGACCAATTGAAGTATTTATGTGTAGTGTTGTA
AAGAGATACGGTTATGCTGAAGGTTTCAGGTGGTTAGCAAACTATCTCTAATCGAGTTAG
TTGAAATTCCAATCATTAAATTATAAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAA
GTAAAAAAAAAAAAAAAAACAAATAAGATTGTGTTNATATAACAAATAGGTTAAGAGGTT
GAATATTTAAATAAAAAAAAAAACTAATAAATAAATAAATAAATATGTTTTTTTATATAA
AA
sequence update 1999. 7.23
Translated Amino Acid sequence 
LLSSDELANVPFLILGNKVDIGNTSEEKFRASLGLTQTTGKGKTTLNGVRPIEVFMCSVV
KRYGYAEGFRWLANYL*ss*lkfqslnykink*kkkkkkkvkkkkktnkivxi*qig*ev
eylnkkkn**ink*icffi*
Translated Amino Acid sequence (All Frames) 
Frame A:
LLSSDELANVPFLILGNKVDIGNTSEEKFRASLGLTQTTGKGKTTLNGVRPIEVFMCSVV
KRYGYAEGFRWLANYL*ss*lkfqslnykink*kkkkkkkvkkkkktnkivxi*qig*ev
eylnkkkn**ink*icffi*


Frame B:
fyhqmnsqmfhssflviklilvihqkrnsehh*vslklqvkvklhsmvldqlkylcvvl*
rdtvmlkvsgg*qtisnrvs*nsnh*iik*inkkkkkkkk*kkkkkqirlcxynk*vkrl
ni*ikkktnk*inkyvflyk


Frame C:
fiir*trkcsiphsw**s*yw*yirreiqsiirshsnyr*r*nytqwc*tn*siyv*cck
eirlc*rfqvvsklslielveipiikl*nk*ikkkkkkkskkkkknk*dcvxitnrlrg*
ifk*kkklink*inmffyik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM883 (SSM883Q) /CSM/SS/SSM8-D/SSM883Q.Seq.d/                        549   e-155
SLJ890 (SLJ890Q) /CSM/SL/SLJ8-D/SLJ890Q.Seq.d/                        549   e-155
FC-AC17 (FC-AC17Q) /CSM/FC/FC-AC/FC-AC17Q.Seq.d/                      549   e-155
FC-068 (FC-068Q) /CSM/CG/CG-FC/FC-068Q.Seq.d/                         549   e-155
FC-BH17 (FC-BH17Q) /CSM/FC/FC-BH/FC-BH17Q.Seq.d/                      474   e-133
VSE442 (VSE442Q) /CSM/VS/VSE4-B/VSE442Q.Seq.d/                        278   6e-74
VSB156 (VSB156Q) /CSM/VS/VSB1-C/VSB156Q.Seq.d/                        208   5e-53
SSJ357 (SSJ357Q) /CSM/SS/SSJ3-C/SSJ357Q.Seq.d/                        180   1e-44
SLK369 (SLK369Q) /CSM/SL/SLK3-C/SLK369Q.Seq.d/                         72   7e-12
VFJ551 (VFJ551Q) /CSM/VF/VFJ5-C/VFJ551Q.Seq.d/                         46   4e-04
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   549  e-168  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42  6e-05  3
BU497898|BU497898.1 PfESToab89g09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    40  1e-04  2
BQ739548|BQ739548.1 PfESToab47d01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    40  1e-04  2
BM276100|BM276100.1 PfESToaa70c05.y1 Plasmodium falciparum 3D7  gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    40  2e-04  2
AZ053393|AZ053393.1 RPCI-23-410P2.TJ RPCI-23 Mus musculus genomic clone RPCI-23-410P2, DNA sequence.    40  2e-04  2
BU498278|BU498278.1 PfESToab95b07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    40  2e-04  2
BU498442|BU498442.1 PfESToab97c07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    40  2e-04  2
BM275353|BM275353.1 PfESToaa67f03.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    40  2e-04  2
BI670537|BI670537.1 PfESToaa01b07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    40  2e-04  2
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_49(AC116963|pid:none) Dictyostelium discoideum chromoso...   122   3e-27
(Q5EMZ6) RecName: Full=Small COPII coat GTPase SAR1;          EC...    77   2e-13
AF424657_1(AF424657|pid:none) Phytophthora infestans clone MY-08...    76   3e-13
AM920431_980(AM920431|pid:none) Penicillium chrysogenum Wisconsi...    76   3e-13
(Q01475) RecName: Full=Small COPII coat GTPase sar1;          EC...    76   3e-13
(Q877B9) RecName: Full=Small COPII coat GTPase sar1;          EC...    76   4e-13
(Q0CUN7) RecName: Full=Small COPII coat GTPase sar1;          EC...    76   4e-13
(P0C951) RecName: Full=Small COPII coat GTPase SAR1;          EC...    76   4e-13
CP000600_259(CP000600|pid:none) Ostreococcus lucimarinus CCE9901...    76   4e-13
(A1D4D1) RecName: Full=Small COPII coat GTPase sar1;          EC...    76   4e-13
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SLJ890 is cyt
5' end seq. ID SLJ890F
5' end seq. 
>SLJ890F.Seq
CTTTTATCATCAGATGAACTCGCAAATGTTCCATTCCTCATTCTTGGTAATAAAGTTGAT
ATTGGTAATACATCAGAAGAGAAATTCAGAGCATCATTAGGTCTCACTCAAACTACAGGT
AAAGGTAAAACTACACTCAATGGTGTTAGACCAATTGAAGTATTTATGTGTAGTGTTGTA
AAGAGATACGGTTATGCTGAAGGTTTCAGGTGGTTAGCAAACTATCTCTAATCGAGTTAG
TTGAAATTCCAATCATTAAATTATAAAATAAA----------
Length of 5' end seq. 272
3' end seq. ID SLJ890Z
3' end seq. 
>SLJ890Z.Seq
----------TCATTAAATTNTAAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAGT
AAAAAAAAAAAAAAAAACAAATAAGATTGTGTTNATATAACAAATAGGTTAAGAGGTTGA
ATATTTAAATAAAAAAAAAAACTAATAAATAAATAAATAAATATGTTTTTTTATATAAAA
Length of 3' end seq. 170
Connected seq. ID SLJ890P
Connected seq. 
>SLJ890P.Seq
CTTTTATCATCAGATGAACTCGCAAATGTTCCATTCCTCATTCTTGGTAATAAAGTTGAT
ATTGGTAATACATCAGAAGAGAAATTCAGAGCATCATTAGGTCTCACTCAAACTACAGGT
AAAGGTAAAACTACACTCAATGGTGTTAGACCAATTGAAGTATTTATGTGTAGTGTTGTA
AAGAGATACGGTTATGCTGAAGGTTTCAGGTGGTTAGCAAACTATCTCTAATCGAGTTAG
TTGAAATTCCAATCATTAAATTATAAAATAAA----------TCATTAAATTNTAAAATA
AATAAATAAAAAAAAAAAAAAAAAAAAAAAGTAAAAAAAAAAAAAAAAACAAATAAGATT
GTGTTNATATAACAAATAGGTTAAGAGGTTGAATATTTAAATAAAAAAAAAAACTAATAA
ATAAATAAATAAATATGTTTTTTTATATAAAA
Length of connected seq. 442
Full length Seq ID SLJ890E
Full length Seq. 
>SLJ890E.Seq
CTTTTATCATCAGATGAACTCGCAAATGTTCCATTCCTCATTCTTGGTAATAAAGTTGAT
ATTGGTAATACATCAGAAGAGAAATTCAGAGCATCATTAGGTCTCACTCAAACTACAGGT
AAAGGTAAAACTACACTCAATGGTGTTAGACCAATTGAAGTATTTATGTGTAGTGTTGTA
AAGAGATACGGTTATGCTGAAGGTTTCAGGTGGTTAGCAAACTATCTCTAATCGAGTTAG
TTGAAATTCCAATCATTAAATTATAAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAA
GTAAAAAAAAAAAAAAAAACAAATAAGATTGTGTTNATATAACAAATAGGTTAAGAGGTT
GAATATTTAAATAAAAAAAAAAACTAATAAATAAATAAATAAATATGTTTTTTTATATAA
AA
Length of full length seq. 422