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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ874
Library SL
(Link to library)
Clone ID SLJ874
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLJ874P
(Link to Original site)
Representative DNA sequence 
>SLJ874 (SLJ874Q) /CSM/SL/SLJ8-D/SLJ874Q.Seq.d/
AAAGAGATGCGATATTCAAGTTAATGTTGATGTATTATTCGATGTTCAAGTTAAACGTTT
CCATGAATATAAACGTCAACTTTTAAATGTCCTCTCTGTTATCAATCGTTATTTGGATAT
TAAAGAAGGTAAAAAGGTTGCTCCAAGAGTTGTCATTTTCGGTGGTAAAGCTGCTCCAGG
TTATTACATGGCAAAACTTATCATTAAATTAATCAACTCTGTAGCTGATGTCGTTAATAA
TGATCCAAAGGTTGGTGATCTTCTCAAGGTTGTATTCATTCCAAACTATTGXXXXXXXXX
XAAGATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTCTCCATTATCTGTTATCT
CTGGTGGTGATAAAACCAACAACACTTTAAAACCAAAACAAACTACAAAAGGTTTTAATA
TTGGTGGTCAACCAGGTAATCCAACAAATTAATTAAATAATAATAATA
sequence update 1999. 3. 5
Translated Amino Acid sequence 
KRCDIQVNVDVLFDVQVKRFHEYKRQLLNVLSVINRYLDIKEGKKVAPRVVIFGGKAAPG
YYMAKLIIKLINSVADVVNNDPKVGDLLKVVFIPNY---

---RLSPLTFVKQTSASPLSVISGGDKTNNTLKPKQTTKGFNIGGQPGNPTN*lnnnn
Translated Amino Acid sequence (All Frames) 
Frame A:
kemryss*c*ciircss*tfp*i*tstfkcplcyqslfgy*rr*kgcskschfrw*scsr
llhgktyh*inqlcs*cr***skgw*ssqgcihskll---

---kiitfnfc*tnfcfsiicylww**nqqhfktktnykrf*ywwstr*snklik***

Frame B:
KRCDIQVNVDVLFDVQVKRFHEYKRQLLNVLSVINRYLDIKEGKKVAPRVVIFGGKAAPG
YYMAKLIIKLINSVADVVNNDPKVGDLLKVVFIPNY---

---RLSPLTFVKQTSASPLSVISGGDKTNNTLKPKQTTKGFNIGGQPGNPTN*lnnnn

Frame C:
rdaifklmlmyysmfklnvsmninvnf*mssllsiviwilkkvkrllqelsfsvvkllqv
itwqnlsln*stl*lmslimiqrlvifsrlysfqti---

---dyhl*lllnkllllhyllslvvikpttl*nqnklqkvlilvvnqviqqin*iiii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ874 (SLJ874Q) /CSM/SL/SLJ8-D/SLJ874Q.Seq.d/                        868   0.0
AHA874 (AHA874Q) /CSM/AH/AHA8-D/AHA874Q.Seq.d/                        577   e-164
SSK526 (SSK526Q) /CSM/SS/SSK5-B/SSK526Q.Seq.d/                        577   e-164
SLE102 (SLE102Q) /CSM/SL/SLE1-A/SLE102Q.Seq.d/                        577   e-164
SHA656 (SHA656Q) /CSM/SH/SHA6-C/SHA656Q.Seq.d/                        577   e-164
CHN708 (CHN708Q) /CSM/CH/CHN7-A/CHN708Q.Seq.d/                        577   e-164
CHK515 (CHK515Q) /CSM/CH/CHK5-A/CHK515Q.Seq.d/                        577   e-164
CHE641 (CHE641Q) /CSM/CH/CHE6-B/CHE641Q.Seq.d/                        577   e-164
CFE364 (CFE364Q) /CSM/CF/CFE3-C/CFE364Q.Seq.d/                        577   e-164
AHO887 (AHO887Q) /CSM/AH/AHO8-D/AHO887Q.Seq.d/                        577   e-164
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.   569  0.0  2
BE579049|BE579049.1 kq53e12.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:T22F3.3 CE13966 GLYCOGEN PHOSPHORYLASE ;, mRNA sequence.    64  7e-19  2
BI703988|BI703988.1 kt53c12.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to WP:CE24003 T22F3.3 glycogen phosphorylase ;, mRNA sequence.    64  4e-13  3
BI703986|BI703986.1 kt53b02.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to WP:CE24003 T22F3.3 glycogen phosphorylase ;, mRNA sequence.    58  2e-11  3
BI323969|BI323969.1 kt47d10.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to WP:CE24003 T22F3.3 glycogen phosphorylase ;, mRNA sequence.    58  2e-11  3
CB098618|CB098618.1 ku55f11.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to WP:CE24003 T22F3.3 glycogen phosphorylase ;, mRNA sequence.    58  3e-11  3
X62142|X62142.1 D. discoideum glpV gene for glycogen phosphorylase 1.    40  9e-05  3
BI773146|BI773146.1 kq49c04.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:CE24003 T22F3.3 glycogen phosphorylase ;, mRNA sequence.    58  1e-04  1
AL437064|AL437064.1 T7 end of clone BC0AA007A04 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    52  1e-04  2
BI676135|BI676135.1 dai86d10.y1 NICHD XGC Ov1 Xenopus laevis cDNA clone IMAGE:5047339 5' similar to SW:PHS1_RAT P09811 GLYCOGEN PHOSPHORYLASE, LIVER FORM ;, mRNA sequence.    42  3e-04  2
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU459003_1874(CU459003|pid:none) Magnetospirillum gryphiswaldens...   131   6e-30
CP000230_2239(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117...   126   2e-28
CP000284_1020(CP000284|pid:none) Methylobacillus flagellatus KT,...   126   2e-28
AY635994_1(AY635994|pid:none) Monacrosporium haptotylum glycogen...   126   2e-28
AP006852_90(AP006852|pid:none) Candida albicans genomic DNA, chr...   125   6e-28
X62142_1(X62142|pid:none) D. discoideum glpV gene for glycogen p...   124   8e-28
AP007255_3062(AP007255|pid:none) Magnetospirillum magneticum AMB...   124   8e-28
CR954204_212(CR954204|pid:none) Ostreococcus tauri strain OTTH05...   124   8e-28
(Q00766) RecName: Full=Glycogen phosphorylase 1;          Short=...   124   8e-28
EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho...   124   1e-27
protein update 2009. 6. 6
PSORT 

 psg: 0.67  gvh: 0.30  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SLJ874 is cyt
5' end seq. ID SLJ874F
5' end seq. 
>SLJ874F.Seq
AAAGAGATGCGATATTCAAGTTAATGTTGATGTATTATTCGATGTTCAAGTTAAACGTTT
CCATGAATATAAACGTCAACTTTTAAATGTCCTCTCTGTTATCAATCGTTATTTGGATAT
TAAAGAAGGTAAAAAGGTTGCTCCAAGAGTTGTCATTTTCGGTGGTAAAGCTGCTCCAGG
TTATTACATGGCAAAACTTATCATTAAATTAATCAACTCTGTAGCTGATGTCGTTAATAA
TGATCCAAAGGTTGGTGATCTTCTCAAGGTTGTATTCATTCCAAACTATTG---------
-
Length of 5' end seq. 291
3' end seq. ID SLJ874Z
3' end seq. 
>SLJ874Z.Seq
----------AAGATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTCTCCATTAT
CTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCAAAACAAACTACAAAAG
GTTTTAATATTGGTGGTCAACCAGGTAATCCAACAAATTAATTAAATAATAATAATA
Length of 3' end seq. 167
Connected seq. ID SLJ874P
Connected seq. 
>SLJ874P.Seq
AAAGAGATGCGATATTCAAGTTAATGTTGATGTATTATTCGATGTTCAAGTTAAACGTTT
CCATGAATATAAACGTCAACTTTTAAATGTCCTCTCTGTTATCAATCGTTATTTGGATAT
TAAAGAAGGTAAAAAGGTTGCTCCAAGAGTTGTCATTTTCGGTGGTAAAGCTGCTCCAGG
TTATTACATGGCAAAACTTATCATTAAATTAATCAACTCTGTAGCTGATGTCGTTAATAA
TGATCCAAAGGTTGGTGATCTTCTCAAGGTTGTATTCATTCCAAACTATTG---------
-AAGATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTCTCCATTATCTGTTATCT
CTGGTGGTGATAAAACCAACAACACTTTAAAACCAAAACAAACTACAAAAGGTTTTAATA
TTGGTGGTCAACCAGGTAATCCAACAAATTAATTAAATAATAATAATA
Length of connected seq. 458
Full length Seq ID -
Full length Seq. -
Length of full length seq. -