NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ818
Library SL
(Link to library)
Clone ID SLJ818
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLJ818P
(Link to Original site)
Representative DNA sequence 
>SLJ818 (SLJ818Q) /CSM/SL/SLJ8-A/SLJ818Q.Seq.d/
CTGGTGGCAATAGTGGAGGTGCTACAGGAGGTAATAGCGGTGGTGCTACTGGAGGCAATA
GCGGTGGTGCTACTGGAGGTAATAGCGGTGGTGCTACTGGAGGCAATAGTGGAGGTGCTA
CAGGTGGTAACAGTGGAGGTGCTACTGGAGGAAATAGCGGCGGTGCTTCATCATCTGGTG
GCAATACTGGAGGTAATAGCGGCGGTGCTACTGGAGGTAATXXXXXXXXXXTCTGATGCT
GCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAGCTCCA
ACGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAGCTGCTGGTGGCGAANATTCA
AGTGCAATCTCCAAATATAGTATTCAATCATTTGGTATCTTTGTTTTATCAATGATAATA
TATTTAGTAATTTAAAATAACTAATATTCTTTATATATATATGAAAATAAAATAAT
sequence update 1999. 3. 5
Translated Amino Acid sequence 
LVAIVEVLQEVIAVVLLEAIAVVLLEVIAVVLLEAIVEVLQVVTVEVLLEEIAAVLHHLV
AILEVIAAVLLEV---

---SDAAATAASTTGRNPRNPTSRAPTVTPTPTSSAEEPAAGGEXSSAISKYSIQSFGIF
VLSMIIYLVI*nn*yslyiyenki
Translated Amino Acid sequence (All Frames) 
Frame A:
LVAIVEVLQEVIAVVLLEAIAVVLLEVIAVVLLEAIVEVLQVVTVEVLLEEIAAVLHHLV
AILEVIAAVLLEV---

---SDAAATAASTTGRNPRNPTSRAPTVTPTPTSSAEEPAAGGEXSSAISKYSIQSFGIF
VLSMIIYLVI*nn*yslyiyenki

Frame B:
wwq*wrcyrr**rwcywrq*rwcywr**rwcywrq*wrcyrw*qwrcywrk*rrcfiiww
qywr**rrcywr*---

---lmlqqpqhqlqaetqeiqqvelqrshqrqplqlknqllvaxiqvqspnivfnhlvsl
fyq**yi**fkitnilyiymkik*

Frame C:
ggnsggatggnsggatggnsggatggnsggatggnsggatggnsggatggnsggasssgg
ntggnsggatggn---

---*ccsnrsinyrqkpkksnk*ssnghtnanlfs*rtscwwrxfkcnlqi*ysiiwylc
findnifsnlk*liffiyi*k*nn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ818 (SLJ818Q) /CSM/SL/SLJ8-A/SLJ818Q.Seq.d/                        759   0.0
SLG214 (SLG214Q) /CSM/SL/SLG2-A/SLG214Q.Seq.d/                        438   e-122
SLA520 (SLA520Q) /CSM/SL/SLA5-A/SLA520Q.Seq.d/                        367   e-100
SSG715 (SSG715Q) /CSM/SS/SSG7-A/SSG715Q.Seq.d/                        361   6e-99
SLK604 (SLK604Q) /CSM/SL/SLK6-A/SLK604Q.Seq.d/                        361   6e-99
SLH864 (SLH864Q) /CSM/SL/SLH8-C/SLH864Q.Seq.d/                        361   6e-99
SLH856 (SLH856Q) /CSM/SL/SLH8-C/SLH856Q.Seq.d/                        361   6e-99
SLG873 (SLG873Q) /CSM/SL/SLG8-D/SLG873Q.Seq.d/                        361   6e-99
SLF348 (SLF348Q) /CSM/SL/SLF3-B/SLF348Q.Seq.d/                        361   6e-99
SLE229 (SLE229Q) /CSM/SL/SLE2-B/SLE229Q.Seq.d/                        361   6e-99
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF312775|AF312775.1 Tetrahymena thermophila macronuclear immobilization antigen LD (SerLD) mRNA, complete cds.    30  0.006  4
BP137251|BP137251.1 Nicotiana tabacum cDNA, clone: BY9928, primer: M13 forward, sequence 1.    30  0.014  4
AF312772|AF312772.1 Tetrahymena thermophila macronuclear immobilization antigen LC (SerLC) mRNA, partial cds.    30  0.089  3
BT001730|BT001730.1 Drosophila melanogaster RE70748 full insert cDNA.    42  0.096  2
AF312771|AF312771.1 Tetrahymena thermophila macronuclear immobilization antigen LB (SerLB) mRNA, complete cds.    30  0.12  3
AF312770|AF312770.1 Tetrahymena thermophila macronuclear immobilization antigen LA (SerLA) mRNA, complete cds.    30  0.12  3
AC116673|AC116673.2 Mus musculus clone RP24-408O23, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46  0.38  1
AC020126|AC020126.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    42  0.49  3
AC140727|AC140727.3 Macaca mulatta clone CH250-288D21, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  1.5  1
CC566510|CC566510.1 CH240_440I20.T7 CHORI-240 Bos taurus genomic clone CH240_440I20, genomic survey sequence.    44  1.5  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    60   2e-08
DQ927304_21(DQ927304|pid:none) Tetrahymena paravorax strain RP m...    32   9.3
AC069143_9(AC069143|pid:none) Sequence of BAC T29M8 from Arabido...    32   9.3
(Q8RYC8) RecName: Full=Auxin response factor 19; AltName: Full=A...    32   9.3
protein update 2009. 1.25
PSORT 

 psg: 0.75  gvh: 0.60  alm: 0.16  top: 0.53  tms: 0.27  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SLJ818 is end
5' end seq. ID SLJ818F
5' end seq. 
>SLJ818F.Seq
CTGGTGGCAATAGTGGAGGTGCTACAGGAGGTAATAGCGGTGGTGCTACTGGAGGCAATA
GCGGTGGTGCTACTGGAGGTAATAGCGGTGGTGCTACTGGAGGCAATAGTGGAGGTGCTA
CAGGTGGTAACAGTGGAGGTGCTACTGGAGGAAATAGCGGCGGTGCTTCATCATCTGGTG
GCAATACTGGAGGTAATAGCGGCGGTGCTACTGGAGGTAAT----------
Length of 5' end seq. 221
3' end seq. ID SLJ818Z
3' end seq. 
>SLJ818Z.Seq
----------TCTGATGCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAA
TCCAACAAGTAGAGCTCCAACGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAGC
TGCTGGTGGCGAANATTCAAGTGCAATCTCCAAATATAGTATTCAATCATTTGGTATCTT
TGTTTTATCAATGATAATATATTTAGTAATTTAAAATAACTAATATTCTTTATATATATA
TGAAAATAAAATAAT
Length of 3' end seq. 245
Connected seq. ID SLJ818P
Connected seq. 
>SLJ818P.Seq
CTGGTGGCAATAGTGGAGGTGCTACAGGAGGTAATAGCGGTGGTGCTACTGGAGGCAATA
GCGGTGGTGCTACTGGAGGTAATAGCGGTGGTGCTACTGGAGGCAATAGTGGAGGTGCTA
CAGGTGGTAACAGTGGAGGTGCTACTGGAGGAAATAGCGGCGGTGCTTCATCATCTGGTG
GCAATACTGGAGGTAATAGCGGCGGTGCTACTGGAGGTAAT----------TCTGATGCT
GCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAGCTCCA
ACGGTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAGCTGCTGGTGGCGAANATTCA
AGTGCAATCTCCAAATATAGTATTCAATCATTTGGTATCTTTGTTTTATCAATGATAATA
TATTTAGTAATTTAAAATAACTAATATTCTTTATATATATATGAAAATAAAATAAT
Length of connected seq. 466
Full length Seq ID -
Full length Seq. -
Length of full length seq. -