SLJ806
Library SL
(Link to library)
Clone ID SLJ806
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12127-1
Original site URL
Representative seq. ID SLJ806Z
(Link to Original site)
Representative DNA sequence
>SLJ806 (SLJ806Q) /CSM/SL/SLJ8-A/SLJ806Q.Seq.d/
XXXXXXXXXXGCGATGGTATTTGGGATGTTATCTCTGATGAAGAGGCTGTTAGTATTGCC
GCTCCAATTGCTGATCCTGAAAAAGCATGTATAAAATTAAGAGATCAAGCTTTCAGTAGG
GGTAGTACTGATAACATTTCTGTAATTGTAATTAGATTTCCACCATTTTTAGAAGGTATT
TAAAAAAAAAATAAAAAAAATAAAAAAAAAAAAATAAAAGAAATAGAATTAAAC
sequence update 1998. 9. 9
Translated Amino Acid sequence
---DGIWDVISDEEAVSIAAPIADPEKACIKLRDQAFSRGSTDNISVIVIRFPPFLEGI*
kknkknkkkkikeieln


Translated Amino Acid sequence (All Frames)
Frame A:
---rwylgcyl**rgc*ycrsnc*s*ksmykikrssfq*g*y**hfcncn*istifrryl
kkk*kk*kkknkrnrik


Frame B:
---DGIWDVISDEEAVSIAAPIADPEKACIKLRDQAFSRGSTDNISVIVIRFPPFLEGI*
kknkknkkkkikeieln


Frame C:
---mvfgmlslmkrllvlplqllilkkhv*n*eiklsvgvvlitfl*l*ldfhhf*kvfk
kkikkikkkk*kk*n*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLJ806 (SLJ806Q) /CSM/SL/SLJ8-A/SLJ806Q.Seq.d/ 339 1e-92
SLA772 (SLA772Q) /CSM/SL/SLA7-C/SLA772Q.Seq.d/ 339 1e-92
SFB385 (SFB385Q) /CSM/SF/SFB3-D/SFB385Q.Seq.d/ 329 1e-89
SHK253 (SHK253Q) /CSM/SH/SHK2-C/SHK253Q.Seq.d/ 137 8e-32
CHM295 (CHM295Q) /CSM/CH/CHM2-D/CHM295Q.Seq.d/ 40 0.014
SSK839 (SSK839Q) /CSM/SS/SSK8-B/SSK839Q.Seq.d/ 36 0.22
SSK252 (SSK252Q) /CSM/SS/SSK2-C/SSK252Q.Seq.d/ 36 0.22
VHL811 (VHL811Q) /CSM/VH/VHL8-A/VHL811Q.Seq.d/ 34 0.87
VFI446 (VFI446Q) /CSM/VF/VFI4-B/VFI446Q.Seq.d/ 34 0.87
SSF769 (SSF769Q) /CSM/SS/SSF7-C/SSF769Q.Seq.d/ 34 0.87

own update 2003. 6.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC122498|AC122498.2 Mus musculus chromosome UNK clone RP24-405C22, WORKING DRAFT SEQUENCE, 8 unordered pieces. 44 0.13 4
AC105303|AC105303.23 Mus musculus chromosome 2 clone rp23-60i12 strain C57BL/6J, complete sequence. 44 0.71 1
CC096793|CC096793.1 CSU-K34.111I23.T7 CSU-K34 Aedes aegypti genomic clone CSU-K34.111I23, DNA sequence. 44 0.71 1
BZ294800|BZ294800.1 CG1112.r1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG1112, DNA sequence. 42 2.8 1
AC140001|AC140001.2 Mus musculus clone RP24-276E6, WORKING DRAFT SEQUENCE, 2 ordered pieces. 42 2.8 1
AC019333|AC019333.2 Homo sapiens chromosome X clone RP11-199F23, WORKING DRAFT SEQUENCE, 24 unordered pieces. 36 6.5 3
BB685576|BB685576.1 Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820419J07, 3' end partial sequence. 30 6.7 2
BY435520|BY435520.1 Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920140D23, 3' end partial sequence. 30 7.2 2
AL845489|AL845489.10 Mouse DNA sequence from clone RP23-300E5 on chromosome 2. 44 8.9 2
AL354696|AL354696.11 Human DNA sequence from clone RP11-74J13 on chromosome 13. 40 11 1
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q67UX7) RecName: Full=Probable protein phosphatase 2C 10; ... 65 7e-10
AY621066_1(AY621066|pid:none) Zea mays protein phosphatase 2C (P... 65 9e-10
BT041319_1(BT041319|pid:none) Zea mays full-length cDNA clone ZM... 65 9e-10
BT034407_1(BT034407|pid:none) Zea mays full-length cDNA clone ZM... 64 1e-09
BT034543_1(BT034543|pid:none) Zea mays full-length cDNA clone ZM... 64 1e-09
AM436463_1(AM436463|pid:none) Vitis vinifera contig VV78X032613.... 64 2e-09
AB083482_1(AB083482|pid:none) Mesembryanthemum crystallinum MPC9... 62 5e-09
FB916629_1(FB916629|pid:none) Sequence 135902 from Patent WO2008... 62 5e-09
EF083289_1(EF083289|pid:none) Picea sitchensis clone WS0282_P11 ... 62 5e-09
FB916639_1(FB916639|pid:none) Sequence 135912 from Patent WO2008... 62 5e-09
protein update 2009. 6. 6
PSORT

psg: 0.75 gvh: 0.34 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SLJ806 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ806Z
3' end seq.
>SLJ806Z.Seq
----------GCGATGGTATTTGGGATGTTATCTCTGATGAAGAGGCTGTTAGTATTGCC
GCTCCAATTGCTGATCCTGAAAAAGCATGTATAAAATTAAGAGATCAAGCTTTCAGTAGG
GGTAGTACTGATAACATTTCTGTAATTGTAATTAGATTTCCACCATTTTTAGAAGGTATT
TAAAAAAAAAATAAAAAAAATAAAAAAAAAAAAATAAAAGAAATAGAATTAAAC
Length of 3' end seq. 224
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -