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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ771
Library SL
(Link to library)
Clone ID SLJ771
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16447-1
Original site URL
Representative seq. ID SLJ771P
(Link to Original site)
Representative DNA sequence 
>SLJ771 (SLJ771Q) /CSM/SL/SLJ7-C/SLJ771Q.Seq.d/
AACACTACTACCTAAAAAATGACACAACCAAATAACTATAAAATTGGAACCAACGTTATC
CACGCTGGTCAATCCGCTGATAAAAATACAGGTGCTGTAATTGTACCAATTTCATTATCC
ACCACTTTCTTACAACCATCACCAGGTGTACTCCATTCTGAATATGATTATTCAAGATCA
GGTAATCCAACAAGAAAAGCATTTGAAGAATGTATTGCAGCATGTGAAAATGCTAAATAT
GCATTATCATTTGCAAXXXXXXXXXXAAGAAAGAGCTAAACTCGGTATCTCTGATACTTT
AATTCGTTTATCCGTTGGTATTGAAGATATTAATGATCTTTTAGCTGATATCTCTCAAGC
TTTAGATAAATGTTAAAAAAATTAAAAAAATTAAAAATTAAAAAAATAAATAAATAAATA
ATAAAAATATTTGTAATAAAGTTTTAAAATTATAATTAT
sequence update 1999. 3. 5
Translated Amino Acid sequence 
nttt*KMTQPNNYKIGTNVIHAGQSADKNTGAVIVPISLSTTFLQPSPGVLHSEYDYSRS
GNPTRKAFEECIAACENAKYALSFA---

---ERAKLGISDTLIRLSVGIEDINDLLADISQALDKC*kn*kn*klkk*ink**kyl**
sfkiii
Translated Amino Acid sequence (All Frames) 
Frame A:
nttt*KMTQPNNYKIGTNVIHAGQSADKNTGAVIVPISLSTTFLQPSPGVLHSEYDYSRS
GNPTRKAFEECIAACENAKYALSFA---

---kkelnsvslil*fvyplvlkilmif*lislkl*invkkikkikn*knk*innknicn
kvlkl*l

Frame B:
tllpkk*hnqitikleptlstlvnplikiqvl*lyqfhypplsynhhqvysilnmiiqdq
viqqekhlknvlqhvkmlnmhyhlq---

---rks*tryl*yfnsfirwy*ry**sfs*ylssfr*mlkklkklkikkink*iikifvi
kf*nyny

Frame C:
hyylkndttk*l*nwnqryprwsir**kyrccnctnfiihhflttitrctpf*i*lfkir
*snkksi*rmycsm*kc*iciiic---

---ERAKLGISDTLIRLSVGIEDINDLLADISQALDKC*kn*kn*klkk*ink**kyl**
sfkiii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO896 (VFO896Q) /CSM/VF/VFO8-D/VFO896Q.Seq.d/                        507   e-143
VFO678 (VFO678Q) /CSM/VF/VFO6-D/VFO678Q.Seq.d/                        507   e-143
VFO645 (VFO645Q) /CSM/VF/VFO6-B/VFO645Q.Seq.d/                        507   e-143
VFN662 (VFN662Q) /CSM/VF/VFN6-C/VFN662Q.Seq.d/                        507   e-143
VFN610 (VFN610Q) /CSM/VF/VFN6-A/VFN610Q.Seq.d/                        507   e-143
VFN545 (VFN545Q) /CSM/VF/VFN5-B/VFN545Q.Seq.d/                        507   e-143
VFN429 (VFN429Q) /CSM/VF/VFN4-B/VFN429Q.Seq.d/                        507   e-143
VFN370 (VFN370Q) /CSM/VF/VFN3-C/VFN370Q.Seq.d/                        507   e-143
VFN347 (VFN347Q) /CSM/VF/VFN3-B/VFN347Q.Seq.d/                        507   e-143
VFN269 (VFN269Q) /CSM/VF/VFN2-C/VFN269Q.Seq.d/                        507   e-143
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U68249|U68249.1 Dictyostelium discoideum CysA (cysA) mRNA, partial cds.   464  e-127  1
AE007608|AE007608.1 Clostridium acetobutylicum ATCC824 section 96 of 356 of the complete genome.    46  0.37  1
AP004596|AP004596.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 4/13.    56  0.42  4
AX349008|AX349008.1 Sequence 466 from Patent WO0202807.           34  1.4  3
AX251959|AX251959.1 Sequence 220 from Patent WO0168911.           34  1.4  3
AF153362|AF153362.1 Dictyostelium discoideum adenylyl cyclase (acrA) gene, complete cds.    44  1.5  1
AC095371|AC095371.4 Rattus norvegicus clone CH230-1G20, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    36  2.6  3
AY163547|AY163547.1 Varroa destructor mitochondrion, complete genome.    34  2.7  5
BX546446|BX546446.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-7K24.    38  2.8  5
AJ493124|AJ493124.1 Varroa destructor complete mitochondrial genome.    34  3.5  5
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DV9) RecName: Full=Cystathionine gamma-lyase;          EC=4....   163   1e-39
FN392319_1281(FN392319|pid:none) Pichia pastoris GS115 chromosom...    87   2e-16
FM992695_735(FM992695|pid:none) Candida dubliniensis CD36 chromo...    85   9e-16
CU633901_206(CU633901|pid:none) Podospora anserina genomic DNA c...    84   2e-15
AP009256_491(AP009256|pid:none) Bifidobacterium adolescentis ATC...    83   3e-15
AM270380_3(AM270380|pid:none) Aspergillus niger contig An16c0280...    82   4e-15
AM420293_881(AM420293|pid:none) Saccharopolyspora erythraea NRRL...    82   7e-15
AE013599_2896(AE013599|pid:none) Drosophila melanogaster chromos...    81   1e-14
CP000769_3804(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c...    81   1e-14
AP007174_46(AP007174|pid:none) Aspergillus oryzae RIB40 genomic ...    80   2e-14
protein update 2009. 6. 6
PSORT 

 psg: 0.80  gvh: 0.54  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial

>> prediction for SLJ771 is cyt
5' end seq. ID SLJ771F
5' end seq. 
>SLJ771F.Seq
AACACTACTACCTAAAAAATGACACAACCAAATAACTATAAAATTGGAACCAACGTTATC
CACGCTGGTCAATCCGCTGATAAAAATACAGGTGCTGTAATTGTACCAATTTCATTATCC
ACCACTTTCTTACAACCATCACCAGGTGTACTCCATTCTGAATATGATTATTCAAGATCA
GGTAATCCAACAAGAAAAGCATTTGAAGAATGTATTGCAGCATGTGAAAATGCTAAATAT
GCATTATCATTTGCAA----------
Length of 5' end seq. 256
3' end seq. ID SLJ771Z
3' end seq. 
>SLJ771Z.Seq
----------AAGAAAGAGCTAAACTCGGTATCTCTGATACTTTAATTCGTTTATCCGTT
GGTATTGAAGATATTAATGATCTTTTAGCTGATATCTCTCAAGCTTTAGATAAATGTTAA
AAAAATTAAAAAAATTAAAAATTAAAAAAATAAATAAATAAATAATAAAAATATTTGTAA
TAAAGTTTTAAAATTATAATTAT
Length of 3' end seq. 193
Connected seq. ID SLJ771P
Connected seq. 
>SLJ771P.Seq
AACACTACTACCTAAAAAATGACACAACCAAATAACTATAAAATTGGAACCAACGTTATC
CACGCTGGTCAATCCGCTGATAAAAATACAGGTGCTGTAATTGTACCAATTTCATTATCC
ACCACTTTCTTACAACCATCACCAGGTGTACTCCATTCTGAATATGATTATTCAAGATCA
GGTAATCCAACAAGAAAAGCATTTGAAGAATGTATTGCAGCATGTGAAAATGCTAAATAT
GCATTATCATTTGCAA----------AAGAAAGAGCTAAACTCGGTATCTCTGATACTTT
AATTCGTTTATCCGTTGGTATTGAAGATATTAATGATCTTTTAGCTGATATCTCTCAAGC
TTTAGATAAATGTTAAAAAAATTAAAAAAATTAAAAATTAAAAAAATAAATAAATAAATA
ATAAAAATATTTGTAATAAAGTTTTAAAATTATAATTAT
Length of connected seq. 449
Full length Seq ID -
Full length Seq. -
Length of full length seq. -