SLJ752
Library SL
(Link to library)
Clone ID SLJ752
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID SLJ752Z
(Link to Original site)
Representative DNA sequence
>SLJ752 (SLJ752Q) /CSM/SL/SLJ7-C/SLJ752Q.Seq.d/
XXXXXXXXXXGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACA
ATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGNTAAGAAAGCCACTGA
AGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAA
ATTCCACGAAAAACTNTAAACAATTTAAGTCGCACTTTGAGTTTTCAAATATAGTAATCA
AATCTAAAAAAAATTTTAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 9. 9
Translated Amino Acid sequence
---FTADLRSHTAGQAFPQCVFDHWASIGVVNKXKKATEVALATRKRKGLAPEIPDLDKF
HEKL*ti*val*vfkysnqi*kkf*kkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---vspliyvptlpvklshnvssiiglqlvlstkxrkplksl*pperekv*pqksqiltn
stknxkqfkshfefsnivikskknfkkkkkkk


Frame B:
---fhr*ftfphcrssfptmclrslgfnwccqqx*esh*srfshqkekrfsprnprs*qi
prktxnnlsrtlsfqi**snlkkilkkkkkk


Frame C:
---FTADLRSHTAGQAFPQCVFDHWASIGVVNKXKKATEVALATRKRKGLAPEIPDLDKF
HEKL*ti*val*vfkysnqi*kkf*kkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSB147 (VSB147Q) /CSM/VS/VSB1-B/VSB147Q.Seq.d/ 454 e-127
VHO581 (VHO581Q) /CSM/VH/VHO5-D/VHO581Q.Seq.d/ 454 e-127
VHG546 (VHG546Q) /CSM/VH/VHG5-B/VHG546Q.Seq.d/ 454 e-127
VHG122 (VHG122Q) /CSM/VH/VHG1-A/VHG122Q.Seq.d/ 454 e-127
VHP749 (VHP749Q) /CSM/VH/VHP7-C/VHP749Q.Seq.d/ 448 e-125
VHO803 (VHO803Q) /CSM/VH/VHO8-A/VHO803Q.Seq.d/ 448 e-125
VHO504 (VHO504Q) /CSM/VH/VHO5-A/VHO504Q.Seq.d/ 448 e-125
VHO104 (VHO104Q) /CSM/VH/VHO1-A/VHO104Q.Seq.d/ 448 e-125
VHI806 (VHI806Q) /CSM/VH/VHI8-A/VHI806Q.Seq.d/ 448 e-125
VHI247 (VHI247Q) /CSM/VH/VHI2-B/VHI247Q.Seq.d/ 448 e-125

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 335 e-111 2
BM395467|BM395467.1 50072-2-9-C10.r.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 60 1e-07 3
AJ299248|AJ299248.1 Nicotiana tabacum partial mRNA for elongation factor 2 (ef2 gene), clone 3cT7. 66 2e-07 1
AF534908|AF534908.1 Tetrahymena thermophila elongation factor 2 gene, complete cds. 60 1e-06 3
BM058578|BM058578.1 2193-94 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2193-94, mRNA sequence. 60 1e-05 1
AL111223|AL111223.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 60 1e-05 1
BM058379|BM058379.1 2191-29 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2191-29, mRNA sequence. 60 1e-05 1
CA916753|CA916753.1 Tp321 Tp cDNA Tetrahymena pyriformis cDNA, mRNA sequence. 60 1e-05 1
X92797|X92797.1 E.histolytica partial mRNA; expressed sequence tag (clone HMZP0097). 50 6e-05 2
CA520042|CA520042.1 KS11005D08 KS11 Capsicum annuum cDNA, mRNA sequence. 58 6e-05 1
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q06193) RecName: Full=Elongation factor 2; Short=EF-2;... 80 2e-14
BC077595_1(BC077595|pid:none) Xenopus laevis translation elongat... 75 9e-13
AM494972_25(AM494972|pid:none) Leishmania braziliensis chromosom... 73 4e-12
(P09445) RecName: Full=Elongation factor 2; Short=EF-2;... 72 5e-12
CP000881_15(CP000881|pid:none) Hemiselmis andersenii chromosome ... 72 5e-12
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 72 6e-12
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 72 6e-12
CR859604_1(CR859604|pid:none) Pongo abelii mRNA; cDNA DKFZp468K0... 72 6e-12
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet... 72 6e-12
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 72 6e-12
protein update 2009. 6. 6
PSORT

psg: 0.81 gvh: 0.48 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: peroxisomal
4.0 %: mitochondrial

>> prediction for SLJ752 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ752Z
3' end seq.
>SLJ752Z.Seq
----------GGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACA
ATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGNTAAGAAAGCCACTGA
AGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAA
ATTCCACGAAAAACTNTAAACAATTTAAGTCGCACTTTGAGTTTTCAAATATAGTAATCA
AATCTAAAAAAAATTTTAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 268
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -