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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ744
Library SL
(Link to library)
Clone ID SLJ744
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLJ744P
(Link to Original site)
Representative DNA sequence 
>SLJ744 (SLJ744Q) /CSM/SL/SLJ7-B/SLJ744Q.Seq.d/
AAAAAAAATAAAAAAAAACAAATAAATAATATTGTAATAGTAATAATAATAACAATAATA
AAATAATAGTAAATAGAATAACTATTAATTTATAAAAAAAAAAAGAAAAAAAAAAAATGT
CAAAAGAAAAAACATCTTGGGGTTCAATAAAAACAAATTTTGCAAGAACTAAACATAAGG
TTTTAGCATCATTTGGTGCTGCAGAAACTACTGTCGATAGTAAAATTGTTXXXXXXXXXX
GGTGTTATTCTCAACAAACCTAGATCAACAACCATGGCTAGTGGTCGTCCATTACCAACA
CCAGCACCAGCACCAACAACTAAACGTGTTCAAGCACTTTATGATTTCCAAGGTCAAGAT
TCAACTGAATTATCATTTAAAAAAGGTGATATGATTACAGTTTTCAAACAAAATGGTGAA
TGGTATGATGCTGAACTTAATGGTGTTAAAGGTTTAGTTCCATGTAATCATACAAGTGGT
TAGGAAAAAAAAAATA
sequence update 1999. 3. 5
Translated Amino Acid sequence 
kk*kktnk*ycnsnnnnnnkiivnritinl*KKKEKKKMSKEKTSWGSIKTNFARTKHKV
LASFGAAETTVDSKIV---

---GVILNKPRSTTMASGRPLPTPAPAPTTKRVQALYDFQGQDSTELSFKKGDMITVFKQ
NGEWYDAELNGVKGLVPCNHTSG*ekkn
Translated Amino Acid sequence (All Frames) 
Frame A:
kknkkkqinniviviiitiik***ie*lliykkkkkkkkcqkkkhlgvq*kqilqelnir
f*hhlvlqkllsivkl---

---GVILNKPRSTTMASGRPLPTPAPAPTTKRVQALYDFQGQDSTELSFKKGDMITVFKQ
NGEWYDAELNGVKGLVPCNHTSG*ekkn

Frame B:
kkikknk*iil******q**nnsk*nny*fikkkrkkknvkrknilgfnknkfckn*t*g
fsiiwccrnycr**nc---

---vlfstnldqqpwlvvvhyqhqhqhqqlnvfkhfmiskvkiqlnyhlkkvi*lqfsnk
mvngmmlnlmvlkv*fhviiqvvrkkki

Frame C:
kk*kktnk*ycnsnnnnnnkiivnritinl*KKKEKKKMSKEKTSWGSIKTNFARTKHKV
LASFGAAETTVDSKIV---

---cysqqt*innhg*wssitntststnn*tcsstl*fprsrfn*iii*kr*ydysfqtk
w*mv*c*t*wc*rfssm*sykwlgkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ744 (SLJ744Q) /CSM/SL/SLJ7-B/SLJ744Q.Seq.d/                        638   0.0
SLB779 (SLB779Q) /CSM/SL/SLB7-D/SLB779Q.Seq.d/                        484   e-136
SLE286 (SLE286Q) /CSM/SL/SLE2-D/SLE286Q.Seq.d/                        456   e-127
CFJ522 (CFJ522Q) /CSM/CF/CFJ5-A/CFJ522Q.Seq.d/                        436   e-121
SFK847 (SFK847Q) /CSM/SF/SFK8-B/SFK847Q.Seq.d/                        402   e-111
SFD842 (SFD842Q) /CSM/SF/SFD8-B/SFD842Q.Seq.d/                        392   e-108
SFD758 (SFD758Q) /CSM/SF/SFD7-C/SFD758Q.Seq.d/                        391   e-108
CFI493 (CFI493Q) /CSM/CF/CFI4-D/CFI493Q.Seq.d/                        367   e-100
CFB395 (CFB395Q) /CSM/CF/CFB3-D/CFB395Q.Seq.d/                        295   3e-79
VSD620 (VSD620Q) /CSM/VS/VSD6-A/VSD620Q.Seq.d/                        194   9e-49
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC120770|AC120770.4 Rattus norvegicus clone CH230-204F23, WORKING DRAFT SEQUENCE.    52  0.026  3
AW617326|AW617326.1 EST323737 L. hirsutum trichome, Cornell University Lycopersicon hirsutum cDNA clone cLHT22L7 5', mRNA sequence.    50  0.026  1
BQ967960|BQ967960.1 QHB32F09.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB32F09, mRNA sequence.    50  0.026  1
BM110566|BM110566.1 EST558102 potato roots Solanum tuberosum cDNA clone cPRO8F1 5' end, mRNA sequence.    48  0.10  1
BI921340|BI921340.1 EST541243 tomato callus Lycopersicon esculentum cDNA clone cLEC72P16 5' end, mRNA sequence.    48  0.10  1
AW928621|AW928621.1 EST337409 tomato flower buds 8 mm to pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOC2H5 5', mRNA sequence.    48  0.10  1
BG600810|BG600810.1 EST505705 cSTS Solanum tuberosum cDNA clone cSTS30I17 5' sequence, mRNA sequence.    48  0.10  1
BE450439|BE450439.1 EST401326 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY13D17, mRNA sequence.    48  0.10  1
BM113858|BM113858.1 EST561394 potato roots Solanum tuberosum cDNA clone cPRO19P7 5' end , mRNA sequence.    48  0.10  1
AW931601|AW931601.1 EST357444 tomato fruit mature green, TAMU Lycopersicon esculentum cDNA clone cLEF45P19 5', mRNA sequence.    48  0.10  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A47106(A47106;B47106)myosin heavy chain ID - slime mold (Dictyos...    59   5e-08
CP000496_677(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    55   1e-06
AF085185_1(AF085185|pid:none) Acanthamoeba castellanii Myosin-IA...    54   2e-06
AP007164_582(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    52   1e-05
AM270339_10(AM270339|pid:none) Aspergillus niger contig An15c012...    52   1e-05
FJ161083_1(FJ161083|pid:none) Strongylocentrotus purpuratus src ...    52   1e-05
(P19706) RecName: Full=Myosin heavy chain IB; AltName: Full=Myos...    51   2e-05
MWAXIB(JQ0095;B34448)myosin heavy chain IB - Acanthamoeba castel...    51   2e-05
BT031113_1(BT031113|pid:none) Drosophila melanogaster IP16877 fu...    50   2e-05
AE013599_1092(AE013599|pid:none) Drosophila melanogaster chromos...    50   2e-05
protein update 2009. 6. 6
PSORT 

 psg: 0.66  gvh: 0.43  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLJ744 is cyt
5' end seq. ID SLJ744F
5' end seq. 
>SLJ744F.Seq
AAAAAAAATAAAAAAAAACAAATAAATAATATTGTAATAGTAATAATAATAACAATAATA
AAATAATAGTAAATAGAATAACTATTAATTTATAAAAAAAAAAAGAAAAAAAAAAAATGT
CAAAAGAAAAAACATCTTGGGGTTCAATAAAAACAAATTTTGCAAGAACTAAACATAAGG
TTTTAGCATCATTTGGTGCTGCAGAAACTACTGTCGATAGTAAAATTGTT----------
Length of 5' end seq. 230
3' end seq. ID SLJ744Z
3' end seq. 
>SLJ744Z.Seq
----------GGTGTTATTCTCAACAAACCTAGATCAACAACCATGGCTAGTGGTCGTCC
ATTACCAACACCAGCACCAGCACCAACAACTAAACGTGTTCAAGCACTTTATGATTTCCA
AGGTCAAGATTCAACTGAATTATCATTTAAAAAAGGTGATATGATTACAGTTTTCAAACA
AAATGGTGAATGGTATGATGCTGAACTTAATGGTGTTAAAGGTTTAGTTCCATGTAATCA
TACAAGTGGTTAGGAAAAAAAAAATA
Length of 3' end seq. 256
Connected seq. ID SLJ744P
Connected seq. 
>SLJ744P.Seq
AAAAAAAATAAAAAAAAACAAATAAATAATATTGTAATAGTAATAATAATAACAATAATA
AAATAATAGTAAATAGAATAACTATTAATTTATAAAAAAAAAAAGAAAAAAAAAAAATGT
CAAAAGAAAAAACATCTTGGGGTTCAATAAAAACAAATTTTGCAAGAACTAAACATAAGG
TTTTAGCATCATTTGGTGCTGCAGAAACTACTGTCGATAGTAAAATTGTT----------
GGTGTTATTCTCAACAAACCTAGATCAACAACCATGGCTAGTGGTCGTCCATTACCAACA
CCAGCACCAGCACCAACAACTAAACGTGTTCAAGCACTTTATGATTTCCAAGGTCAAGAT
TCAACTGAATTATCATTTAAAAAAGGTGATATGATTACAGTTTTCAAACAAAATGGTGAA
TGGTATGATGCTGAACTTAATGGTGTTAAAGGTTTAGTTCCATGTAATCATACAAGTGGT
TAGGAAAAAAAAAATA
Length of connected seq. 486
Full length Seq ID -
Full length Seq. -
Length of full length seq. -