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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ733
Library SL
(Link to library)
Clone ID SLJ733
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11611-1
Original site URL
Representative seq. ID SLJ733Z
(Link to Original site)
Representative DNA sequence 
>SLJ733 (SLJ733Q) /CSM/SL/SLJ7-B/SLJ733Q.Seq.d/
XXXXXXXXXXCACTGGTCAAAATATGACTGGGGGTCCAGGCGGTAAGTTTGNCCATAAAA
AAGAAATGTATCACCCTTATCCAATGGTTACTCCAACAACTAATCCTTATGCTAAATATG
ATACTTTTGGTTATCCACCACCACAAGACCGTTATGGTAAAACTCAAGGTGGTAAACCAC
AACAGAGTAAATATAGATTTTCTCCATATTAATTCTGTTTGAGGACAAAAAAAAAAAACA
AAAAAAAAAAACA
sequence update 1998. 9. 9
Translated Amino Acid sequence 
---TGQNMTGGPGGKFXHKKEMYHPYPMVTPTTNPYAKYDTFGYPPPQDRYGKTQGGKPQ
QSKYRFSPY*fclrtkkknkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---TGQNMTGGPGGKFXHKKEMYHPYPMVTPTTNPYAKYDTFGYPPPQDRYGKTQGGKPQ
QSKYRFSPY*fclrtkkknkkkk


Frame B:
---lvki*lgvqavslxikkkcitliqwllqqlilmlnmillvihhhktvmvklkvvnhn
rvnidflhinsv*gqkkktkkkn


Frame C:
---wskydwgsrr*vxp*krnvsplsngysnn*slc*i*yfwlstttrplw*nsrw*ttt
e*i*ifsililfedkkkkqkkkt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ733 (SLJ733Q) /CSM/SL/SLJ7-B/SLJ733Q.Seq.d/                        422   e-117
SLH334 (SLH334Q) /CSM/SL/SLH3-B/SLH334Q.Seq.d/                        422   e-117
SLG103 (SLG103Q) /CSM/SL/SLG1-A/SLG103Q.Seq.d/                        422   e-117
SLE293 (SLE293Q) /CSM/SL/SLE2-D/SLE293Q.Seq.d/                        422   e-117
SLB849 (SLB849Q) /CSM/SL/SLB8-C/SLB849Q.Seq.d/                        422   e-117
SLB582 (SLB582Q) /CSM/SL/SLB5-D/SLB582Q.Seq.d/                        422   e-117
SLA146 (SLA146Q) /CSM/SL/SLA1-B/SLA146Q.Seq.d/                        422   e-117
SSD480 (SSD480Q) /CSM/SS/SSD4-D/SSD480Q.Seq.d/                        408   e-113
SFJ240 (SFJ240Q) /CSM/SF/SFJ2-B/SFJ240Q.Seq.d/                        389   e-107
SFG361 (SFG361Q) /CSM/SF/SFG3-C/SFG361Q.Seq.d/                        389   e-107
own update 2001. 6.18
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AR020722|AR020722.1 Sequence 11 from patent US 5789194.           44  0.77  1
BI978255|BI978255.1 rC04 Old Blush petal SMART library Rosa chinensis cDNA 5' similar to metallothionein-like protein, mRNA sequence.    38  2.7  2
BI978791|BI978791.1 xC04 Old Blush petal SMART library Rosa chinensis cDNA 5' similar to metallothionein-like protein (PPFRU16), mRNA sequence.    38  2.8  2
BI978067|BI978067.1 pC05 Old Blush petal SMART library Rosa chinensis cDNA 5' similar to metallothionein-like protein, mRNA sequence.    38  2.8  2
BI978298|BI978298.1 rG04 Old Blush petal SMART library Rosa chinensis cDNA 5' similar to metallothionein-like protein, mRNA sequence.    38  2.8  2
BI977377|BI977377.1 gA12 Old Blush petal SMART library Rosa chinensis cDNA 5' similar to metallothionein-like protein, mRNA sequence.    38  2.8  2
AC093475|AC093475.2 Mus musculus clone RP23-54K22, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42  3.8  2
BX005450|BX005450.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-150O23.    40     12  1
AC026376|AC026376.27 Mus musculus chromosome 11 clone RP23-77I12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    40     12  1
AC105503|AC105503.4 Rattus norvegicus clone CH230-200D5, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    40     12  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY617045_1(AY617045|pid:none) Sepioloidea lineolata rhodopsin ge...    35   0.81
CT573213_1121(CT573213|pid:none) Frankia alni str. ACN14A chromo...    33   3.1
AP007154_418(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...    33   4.0
AL132965_19(AL132965|pid:none) Arabidopsis thaliana DNA chromoso...    32   5.2
AB234322_1(AB234322|pid:none) Staphylococcus sciuri subsp. carna...    32   8.9
protein update 2009. 1.25
PSORT 

 psg: 0.79  gvh: 0.11  alm: 0.70  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for SLJ733 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ733Z
3' end seq. 
>SLJ733Z.Seq
----------CACTGGTCAAAATATGACTGGGGGTCCAGGCGGTAAGTTTGNCCATAAAA
AAGAAATGTATCACCCTTATCCAATGGTTACTCCAACAACTAATCCTTATGCTAAATATG
ATACTTTTGGTTATCCACCACCACAAGACCGTTATGGTAAAACTCAAGGTGGTAAACCAC
AACAGAGTAAATATAGATTTTCTCCATATTAATTCTGTTTGAGGACAAAAAAAAAAAACA
AAAAAAAAAAACA
Length of 3' end seq. 243
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -