AFK592
Library AF
(Link to library)
Clone ID AFK592
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15648-1
Original site URL
Representative seq. ID AFK592P
(Link to Original site)
Representative DNA sequence
>AFK592 (AFK592Q) /CSM/AF/AFK5-D/AFK592Q.Seq.d/
ATATAAAATTAAATTGTATATTATAAAGAATGAATCAAAATACAATTAGAAGATTACAGG
TTACTCAAAGACATTTATTAGAGCAACAACAAGAACAACAACAATATCAACATAATAGTT
CAGATTCATTTGATGGATTAGAATCATCAGATACATGTGGTATCATTGGTTTTGTTGGTA
AAGAGGAAGCAATTAATTATTTATTAGAAGGTTTAGCAATTTTAGAGAATAGAGGTTATG
ATTCTGCTGGTGTTACAACTATTTCATCAGATAATGATTTAGTTACTTCAAAATATGCAA
GTTTAAATACAACTAGTGATGCAATTACAAGATTAAAATCTGTAGCACATTTACATAAAG
GTCATGTTATTGGTATTGCACATACAAGATGGGCAACTCATGGTGGTAAAACTGATAAAA
ATGCACATCCACATCTTGATTATAAAGATAGAGTTGCAGTTATTCATAATGGTGTAATTG
AAAATAATATTATATTAAAAGAAGAACTTGAAAAGAAXXXXXXXXXXGTATTCCAAGATT
CTCAATTGTAAATGCCGTTGGTTCATTGATTGCAAGAAGTTCAATTTGTGGTGTCTATTT
AAATGCAGGTCGTGAACATGCTGTAGCTTCAACCAAAGCATTCTCATCACAAGTTACAGT
ATTATCATTGGTTGCAAATTAGTTCGCTCAACATAGAGGCATCGAAGAGGGTAAAAGACG
TCAGTTAATCGATTCTCTTCATCGTTTACCAACAAATTTGGGTATGGCATTACGTGTTCG
TGAACAATGTAAAGCAATCGCTCAAAAAATTTATAAAAAGAATTCAATCTTTGTTTTGGG
TAAAGGTTTCGCTGAACCAATCGCATTTGAAGGTGCTTTGAAAATTAAAGAAATCACCTA
TTGTCATGCTGAAGGTTATAGTGGTGGTGCTCTTAAACATGGTCCATTCGCTCTCATTGA
ACAAGATACACCAATTATCTTGATCATTTTAGATGATAGTAATTCTCCATTAATGAGAGT
CGCCGCTGAAGAAGTAAAAGCAAGAGGTGCTCATACTATCGTCATTACAAATAATTCAAC
TTTGGCTAAACATATCGCTCATGATACCATTTTAATTCCAAGTAATGGTATTTTAACTGC
ACTTTTAGCTGCAATTCCATTACAATTATTAGCTTAGAAAGGCAATTTGTAAAAATATGA
CCCAGATCGTCCAAAAAATTAGCCAAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
iklncil*RMNQNTIRRLQVTQRHLLEQQQEQQQYQHNSSDSFDGLESSDTCGIIGFVGK
EEAINYLLEGLAILENRGYDSAGVTTISSDNDLVTSKYASLNTTSDAITRLKSVAHLHKG
HVIGIAHTRWATHGGKTDKNAHPHLDYKDRVAVIHNGVIENNIILKEELEK---

---IPRFSIVNAVGSLIARSSICGVYLNAGREHAVASTKAFSSQVTVLSLVAN*faqhrg
ieegkrrqlidslhrlptnlgmalrvreqckaiaqkiykknsifvlgkgfaepiafegal
kikeitychaegysggalkhgpfalieqdtpiiliilddsnsplmrvaaeevkargahti
vitnnstlakhiahdtilipsngiltallaaiplqlla*kgnl*kydpdrpkn*pk


Translated Amino Acid sequence (All Frames)
Frame A:
i*n*ivyyke*ikiqledyrllkdiy*snnknnnniniivqihlmd*nhqihvvslvllv
krkqliiy*kv*qf*rievmillvlqlfhqimi*llqnmqv*iqlvmqlqd*nl*hiyik
vmllvlhiqdgqlmvvklikmhihiliikielqlfimv*lkiily*kknlkr---

---vfqdsql*mplvh*lqevqfvvsi*mqvvnml*lqpkhshhklqyyhwlqisslnie
askrvkdvs*silfivyqqiwvwhyvfvnnvkqslkkfikriqslfwvkvslnqshlkvl
*klkkspivmlkvivvvllnmvhslslnkihqls*sf*mivilh**esplkk*kqevlil
sslqiiqlwlnislmipf*fqvmvf*lhf*lqfhyny*lrkaicknmtqivqkisqn

Frame B:
ykiklyiikneskyn*kitgysktfirattrtttist**frfi*wiriirymwyhwfcw*
rgsn*lfirrfsnfre*rl*fcwcynyfir**fsyfkickfkyn**cnykikicstft*r
scywyctykmgnsww*n**kctsts*l*r*scsys*wcn*k*yyikrrt*ke---

---yskilnckcrwfidckkfnlwclfkcrs*tccsfnqsilitsysiiigcklvrst*r
hrrg*ktsvnrfsssftnkfgygitcs*tm*snrsknl*kefnlcfg*rfr*tnri*rcf
en*rnhllsc*rl*wwcs*twsirsh*trytnyldhfr***fsinesrr*rskskrcsyy
rhyk*fnfg*tyrs*yhfnsk*wyfnctfscnsitiislerqfvki*prsskklak

Frame C:
iklncil*RMNQNTIRRLQVTQRHLLEQQQEQQQYQHNSSDSFDGLESSDTCGIIGFVGK
EEAINYLLEGLAILENRGYDSAGVTTISSDNDLVTSKYASLNTTSDAITRLKSVAHLHKG
HVIGIAHTRWATHGGKTDKNAHPHLDYKDRVAVIHNGVIENNIILKEELEK---

---IPRFSIVNAVGSLIARSSICGVYLNAGREHAVASTKAFSSQVTVLSLVAN*faqhrg
ieegkrrqlidslhrlptnlgmalrvreqckaiaqkiykknsifvlgkgfaepiafegal
kikeitychaegysggalkhgpfalieqdtpiiliilddsnsplmrvaaeevkargahti
vitnnstlakhiahdtilipsngiltallaaiplqlla*kgnl*kydpdrpkn*pk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK592 (AFK592Q) /CSM/AF/AFK5-D/AFK592Q.Seq.d/ 2377 0.0
CFC248 (CFC248Q) /CSM/CF/CFC2-B/CFC248Q.Seq.d/ 1374 0.0
SFE659 (SFE659Q) /CSM/SF/SFE6-C/SFE659Q.Seq.d/ 1364 0.0
CFI829 (CFI829Q) /CSM/CF/CFI8-B/CFI829Q.Seq.d/ 1346 0.0
AFM651 (AFM651Q) /CSM/AF/AFM6-C/AFM651Q.Seq.d/ 1330 0.0
SSD124 (SSD124Q) /CSM/SS/SSD1-A/SSD124Q.Seq.d/ 1302 0.0
AFL243 (AFL243Q) /CSM/AF/AFL2-B/AFL243Q.Seq.d/ 1285 0.0
AFO350 (AFO350Q) /CSM/AF/AFO3-C/AFO350Q.Seq.d/ 1281 0.0
VFD470 (VFD470Q) /CSM/VF/VFD4-C/VFD470Q.Seq.d/ 1247 0.0
CFF878 (CFF878Q) /CSM/CF/CFF8-D/CFF878Q.Seq.d/ 1245 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence. 66 5e-18 14
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 38 6e-09 15
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 42 8e-09 16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 9e-09 20
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 46 1e-08 13
BQ576997|BQ576997.1 PfESToab12e02.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:GLMS_SYNY3 P72720 GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] ;, mRNA sequence. 54 2e-07 3
BU497494|BU497494.1 PfESToab64b06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:GLMS_SYNY3 P72720 GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] ;, mRNA sequence. 54 3e-07 3
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 42 3e-07 21
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence. 38 4e-07 16
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 44 7e-07 25
dna update 2004. 8. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM910988_95(AM910988|pid:none) Plasmodium knowlesi strain H chro... 183 1e-44
CP000777_489(CP000777|pid:none) Leptospira biflexa serovar Patoc... 144 6e-33
CP000108_5(CP000108|pid:none) Chlorobium chlorochromatii CaD3, c... 141 5e-32
CP001097_87(CP001097|pid:none) Chlorobium limicola DSM 245, comp... 140 9e-32
BC160581_1(BC160581|pid:none) Xenopus tropicalis glutamine-fruct... 140 1e-31
CP000607_136(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 138 4e-31
CP001101_96(CP001101|pid:none) Chlorobium phaeobacteroides BS1, ... 138 4e-31
CP000383_3779(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 138 4e-31
CP000112_502(CP000112|pid:none) Desulfovibrio desulfuricans G20,... 136 1e-30
BC163281_1(BC163281|pid:none) Danio rerio glutamine-fructose-6-p... 135 2e-30
protein update 2009. 4.24
PSORT

psg: 0.61 gvh: 0.32 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.50 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: mitochondrial
24.0 %: cytoplasmic

>> prediction for AFK592 is nuc

5' end seq. ID AFK592F
5' end seq.
>AFK592F.Seq
ATATAAAATTAAATTGTATATTATAAAGAATGAATCAAAATACAATTAGAAGATTACAGG
TTACTCAAAGACATTTATTAGAGCAACAACAAGAACAACAACAATATCAACATAATAGTT
CAGATTCATTTGATGGATTAGAATCATCAGATACATGTGGTATCATTGGTTTTGTTGGTA
AAGAGGAAGCAATTAATTATTTATTAGAAGGTTTAGCAATTTTAGAGAATAGAGGTTATG
ATTCTGCTGGTGTTACAACTATTTCATCAGATAATGATTTAGTTACTTCAAAATATGCAA
GTTTAAATACAACTAGTGATGCAATTACAAGATTAAAATCTGTAGCACATTTACATAAAG
GTCATGTTATTGGTATTGCACATACAAGATGGGCAACTCATGGTGGTAAAACTGATAAAA
ATGCACATCCACATCTTGATTATAAAGATAGAGTTGCAGTTATTCATAATGGTGTAATTG
AAAATAATATTATATTAAAAGAAGAACTTGAAAAGAA----------
Length of 5' end seq. 517
3' end seq. ID AFK592Z
3' end seq.
>AFK592Z.Seq
----------GTATTCCAAGATTCTCAATTGTAAATGCCGTTGGTTCATTGATTGCAAGA
AGTTCAATTTGTGGTGTCTATTTAAATGCAGGTCGTGAACATGCTGTAGCTTCAACCAAA
GCATTCTCATCACAAGTTACAGTATTATCATTGGTTGCAAATTAGTTCGCTCAACATAGA
GGCATCGAAGAGGGTAAAAGACGTCAGTTAATCGATTCTCTTCATCGTTTACCAACAAAT
TTGGGTATGGCATTACGTGTTCGTGAACAATGTAAAGCAATCGCTCAAAAAATTTATAAA
AAGAATTCAATCTTTGTTTTGGGTAAAGGTTTCGCTGAACCAATCGCATTTGAAGGTGCT
TTGAAAATTAAAGAAATCACCTATTGTCATGCTGAAGGTTATAGTGGTGGTGCTCTTAAA
CATGGTCCATTCGCTCTCATTGAACAAGATACACCAATTATCTTGATCATTTTAGATGAT
AGTAATTCTCCATTAATGAGAGTCGCCGCTGAAGAAGTAAAAGCAAGAGGTGCTCATACT
ATCGTCATTACAAATAATTCAACTTTGGCTAAACATATCGCTCATGATACCATTTTAATT
CCAAGTAATGGTATTTTAACTGCACTTTTAGCTGCAATTCCATTACAATTATTAGCTTAG
AAAGGCAATTTGTAAAAATATGACCCAGATCGTCCAAAAAATTAGCCAAAAC
Length of 3' end seq. 702
Connected seq. ID AFK592P
Connected seq.
>AFK592P.Seq
ATATAAAATTAAATTGTATATTATAAAGAATGAATCAAAATACAATTAGAAGATTACAGG
TTACTCAAAGACATTTATTAGAGCAACAACAAGAACAACAACAATATCAACATAATAGTT
CAGATTCATTTGATGGATTAGAATCATCAGATACATGTGGTATCATTGGTTTTGTTGGTA
AAGAGGAAGCAATTAATTATTTATTAGAAGGTTTAGCAATTTTAGAGAATAGAGGTTATG
ATTCTGCTGGTGTTACAACTATTTCATCAGATAATGATTTAGTTACTTCAAAATATGCAA
GTTTAAATACAACTAGTGATGCAATTACAAGATTAAAATCTGTAGCACATTTACATAAAG
GTCATGTTATTGGTATTGCACATACAAGATGGGCAACTCATGGTGGTAAAACTGATAAAA
ATGCACATCCACATCTTGATTATAAAGATAGAGTTGCAGTTATTCATAATGGTGTAATTG
AAAATAATATTATATTAAAAGAAGAACTTGAAAAGAA----------GTATTCCAAGATT
CTCAATTGTAAATGCCGTTGGTTCATTGATTGCAAGAAGTTCAATTTGTGGTGTCTATTT
AAATGCAGGTCGTGAACATGCTGTAGCTTCAACCAAAGCATTCTCATCACAAGTTACAGT
ATTATCATTGGTTGCAAATTAGTTCGCTCAACATAGAGGCATCGAAGAGGGTAAAAGACG
TCAGTTAATCGATTCTCTTCATCGTTTACCAACAAATTTGGGTATGGCATTACGTGTTCG
TGAACAATGTAAAGCAATCGCTCAAAAAATTTATAAAAAGAATTCAATCTTTGTTTTGGG
TAAAGGTTTCGCTGAACCAATCGCATTTGAAGGTGCTTTGAAAATTAAAGAAATCACCTA
TTGTCATGCTGAAGGTTATAGTGGTGGTGCTCTTAAACATGGTCCATTCGCTCTCATTGA
ACAAGATACACCAATTATCTTGATCATTTTAGATGATAGTAATTCTCCATTAATGAGAGT
CGCCGCTGAAGAAGTAAAAGCAAGAGGTGCTCATACTATCGTCATTACAAATAATTCAAC
TTTGGCTAAACATATCGCTCATGATACCATTTTAATTCCAAGTAATGGTATTTTAACTGC
ACTTTTAGCTGCAATTCCATTACAATTATTAGCTTAGAAAGGCAATTTGTAAAAATATGA
CCCAGATCGTCCAAAAAATTAGCCAAAAC
Length of connected seq. 1219
Full length Seq ID -
Full length Seq. -
Length of full length seq. -