AFK590
Library AF
(Link to library)
Clone ID AFK590
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15281-1|Contig-U15533-1
Original site URL
Representative seq. ID AFK590P
(Link to Original site)
Representative DNA sequence
>AFK590 (AFK590Q) /CSM/AF/AFK5-D/AFK590Q.Seq.d/
ATATCGCCACAATGGTAAACATACTCTCTGAACAACATCAAGCAAGTGCTCGTGATGTTT
GTAGAAATCCAAGAGAGGAAACCCTAAGATCAAAACGTTCAGAACTTTCAAGTAAATTAT
TATCAGCAATCGATGATTTAATCTACACTATTAAATTGATTTTCGAGAATAATACAAAAT
TCGTTGATCTCGCTTTCAAATGGAAACCAGTTCGTACAATGGCTGAAGATGAAGTTACTC
GTGCCTCCGCTGTTCTTATTGATAATCTTCGTACACTTCCAAAATCAATTGAGGCTGGTA
ATGGTCCAGCAGCAGCTAGAGAGATTGTCAATGCTGCAAACTTACAAATTTCAAATGCAA
TCATCGTTGCAAATCGTTGTCAAGATCCAGTTAAAAAGAAAATGTTATTGAAACAAATTG
AAGAATTAAAGAAATTGACACCAATGCTTATCTCTGCTATGAAACCAGTTTTGGAGAATC
CAAATGATCAAGAAGCTCAAAAACATTTAGAATCTGTAATTTATTCAACCCAAAAAGCAT
CTGAAGCATTGGCAACXXXXXXXXXXTGAANAACNATTAGNTACNTGNGNTAAAGGNTTA
NCNGGGGCCGNAATTAATCNTGNAAAATCNTCTGAANCTGCNNCNATTAAACAAANAAAA
GGNCCCCNNCNATNAATAATAAAAAAAAAAAAAATAATAGTAATAATAATTAATATTTTA
AAAAAAATAAAATAAAAAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
IATMVNILSEQHQASARDVCRNPREETLRSKRSELSSKLLSAIDDLIYTIKLIFENNTKF
VDLAFKWKPVRTMAEDEVTRASAVLIDNLRTLPKSIEAGNGPAAAREIVNAANLQISNAI
IVANRCQDPVKKKMLLKQIEELKKLTPMLISAMKPVLENPNDQEAQKHLESVIYSTQKAS
EALA---

---EXXLXTXXKGLXGAXINXXKSSEXAXIKQXKGPXXXIIKKKKIIVIIINILKKIK*k
n


Translated Amino Acid sequence (All Frames)
Frame A:
ispqw*tyslnnikqvlvmfveiqerkp*dqnvqnfqvnyyqqsmi*stlln*fsriiqn
slislsngnqfvqwlkmkllvpplflliifvhfqnqlrlvmvqqqlerlsmlqtykfqmq
sslqivvkiqlkrkcy*nklkn*rn*hqclsll*nqfwriqmikklkni*nl*fiqpkkh
lkhwq---

---*xtixyxx*rxxxgrn*sxkix*xcxx*txkrxpxxnnkkkknnsnnn*yfkknkik
k

Frame B:
yrhngkhtl*ttsskcs*cl*kskrgnpkiktfrtfk*iiisnr*fnlhy*idfre*yki
r*srfqmetssyng*r*sysclrcsy**ssytskin*gw*wssss*rdcqcckltnfkcn
hrckslsrss*kenvietn*rikeidtnaylcyetsfgesk*srssktfricnlfnpksi
*sign---

---EXXLXTXXKGLXGAXINXXKSSEXAXIKQXKGPXXXIIKKKKIIVIIINILKKIK*k
n

Frame C:
IATMVNILSEQHQASARDVCRNPREETLRSKRSELSSKLLSAIDDLIYTIKLIFENNTKF
VDLAFKWKPVRTMAEDEVTRASAVLIDNLRTLPKSIEAGNGPAAAREIVNAANLQISNAI
IVANRCQDPVKKKMLLKQIEELKKLTPMLISAMKPVLENPNDQEAQKHLESVIYSTQKAS
EALA---

---xnx*xxxxkxxxgpxlixxnxlxlxxlnkxkxpxxx**kkkk*****lif*kk*nkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK590 (AFK590Q) /CSM/AF/AFK5-D/AFK590Q.Seq.d/ 1146 0.0
AFB214 (AFB214Q) /CSM/AF/AFB2-A/AFB214Q.Seq.d/ 1082 0.0
AFI812 (AFI812Q) /CSM/AF/AFI8-A/AFI812Q.Seq.d/ 1025 0.0
AFL705 (AFL705Q) /CSM/AF/AFL7-A/AFL705Q.Seq.d/ 773 0.0
AHA763 (AHA763Q) /CSM/AH/AHA7-C/AHA763Q.Seq.d/ 490 e-137
AHH249 (AHH249Q) /CSM/AH/AHH2-C/AHH249Q.Seq.d/ 446 e-124
AHJ471 (AHJ471Q) /CSM/AH/AHJ4-C/AHJ471Q.Seq.d/ 389 e-107
CHG256 (CHG256Q) /CSM/CH/CHG2-C/CHG256Q.Seq.d/ 230 2e-59
CFJ884 (CFJ884Q) /CSM/CF/CFJ8-D/CFJ884Q.Seq.d/ 40 0.047
VHN119 (VHN119Q) /CSM/VH/VHN1-A/VHN119Q.Seq.d/ 38 0.19

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BH155038|BH155038.1 ENTTH92TF Entamoeba histolytica Sheared DNA Entamoeba histolyticagenomic, genomic survey sequence. 42 0.15 2
AC091553|AC091553.14 Trypanosoma brucei chromosome VII clone RPCI93-10C21, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 38 0.35 3
BX572094|BX572094.1 Prochlorococcus marinus MED4 complete genome; segment 5/5. 36 0.41 6
AP000343|AP000343.1 Homo sapiens genomic DNA, chromosome 22q11.2, clone KB282B12. 46 0.80 1
AP000344|AP000344.1 Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1269D1. 46 0.80 1
AP000356|AP000356.1 Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1995A5. 46 0.80 1
AP000357|AP000357.1 Homo sapiens genomic DNA, chromosome 22q11.2, clone N95F10. 46 0.80 1
AP000838|AP000838.4 Homo sapiens genomic DNA, chromosome 11q clone:CMB9-21A6. 40 1.7 4
AP001529|AP001529.3 Homo sapiens genomic DNA, chromosome 18q22 clone:RP11-751D8, WORKING DRAFT SEQUENCE, 18 unordered pieces. 40 1.8 5
AC006771|AC006771.1 Caenorhabditis elegans clone Y46C8, WORKING DRAFT SEQUENCE, 8 unordered pieces. 38 2.1 10
dna update 2004. 8. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54MH2) RecName: Full=Probable vinculin; 316 4e-85
CP001124_721(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 35 1.8
CR626927_373(CR626927|pid:none) Bacteroides fragilis NCTC 9343, ... 34 3.9
CP000679_1632(CP000679|pid:none) Caldicellulosiruptor saccharoly... 34 5.1
CP000020_341(CP000020|pid:none) Vibrio fischeri ES114 chromosome... 34 5.1
BC123070_1(BC123070|pid:none) Xenopus tropicalis cDNA clone IMAG... 33 6.7
(P12003) RecName: Full=Vinculin; AltName: Full=Metavinculin; 33 8.8
A29997(A31346;S03973;A27884;S39759;S32807;S65691;A29997)meta-vin... 33 8.8
(Q64727) RecName: Full=Vinculin; AltName: Full=Metavinculin; &B... 33 8.8
CP001139_334(CP001139|pid:none) Vibrio fischeri MJ11 chromosome ... 33 8.8
protein update 2008.11.25
PSORT

psg: 0.75 gvh: 0.44 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for AFK590 is nuc

5' end seq. ID AFK590F
5' end seq.
>AFK590F.Seq
ATATCGCCACAATGGTAAACATACTCTCTGAACAACATCAAGCAAGTGCTCGTGATGTTT
GTAGAAATCCAAGAGAGGAAACCCTAAGATCAAAACGTTCAGAACTTTCAAGTAAATTAT
TATCAGCAATCGATGATTTAATCTACACTATTAAATTGATTTTCGAGAATAATACAAAAT
TCGTTGATCTCGCTTTCAAATGGAAACCAGTTCGTACAATGGCTGAAGATGAAGTTACTC
GTGCCTCCGCTGTTCTTATTGATAATCTTCGTACACTTCCAAAATCAATTGAGGCTGGTA
ATGGTCCAGCAGCAGCTAGAGAGATTGTCAATGCTGCAAACTTACAAATTTCAAATGCAA
TCATCGTTGCAAATCGTTGTCAAGATCCAGTTAAAAAGAAAATGTTATTGAAACAAATTG
AAGAATTAAAGAAATTGACACCAATGCTTATCTCTGCTATGAAACCAGTTTTGGAGAATC
CAAATGATCAAGAAGCTCAAAAACATTTAGAATCTGTAATTTATTCAACCCAAAAAGCAT
CTGAAGCATTGGCAAC----------
Length of 5' end seq. 556
3' end seq. ID AFK590Z
3' end seq.
>AFK590Z.Seq
----------TGAANAACNATTAGNTACNTGNGNTAAAGGNTTANCNGGGGCCGNAATTA
ATCNTGNAAAATCNTCTGAANCTGCNNCNATTAAACAAANAAAAGGNCCCCNNCNATNAA
TAATAAAAAAAAAAAAAATAATAGTAATAATAATTAATATTTTAAAAAAAATAAAATAAA
AAAAT
Length of 3' end seq. 175
Connected seq. ID AFK590P
Connected seq.
>AFK590P.Seq
ATATCGCCACAATGGTAAACATACTCTCTGAACAACATCAAGCAAGTGCTCGTGATGTTT
GTAGAAATCCAAGAGAGGAAACCCTAAGATCAAAACGTTCAGAACTTTCAAGTAAATTAT
TATCAGCAATCGATGATTTAATCTACACTATTAAATTGATTTTCGAGAATAATACAAAAT
TCGTTGATCTCGCTTTCAAATGGAAACCAGTTCGTACAATGGCTGAAGATGAAGTTACTC
GTGCCTCCGCTGTTCTTATTGATAATCTTCGTACACTTCCAAAATCAATTGAGGCTGGTA
ATGGTCCAGCAGCAGCTAGAGAGATTGTCAATGCTGCAAACTTACAAATTTCAAATGCAA
TCATCGTTGCAAATCGTTGTCAAGATCCAGTTAAAAAGAAAATGTTATTGAAACAAATTG
AAGAATTAAAGAAATTGACACCAATGCTTATCTCTGCTATGAAACCAGTTTTGGAGAATC
CAAATGATCAAGAAGCTCAAAAACATTTAGAATCTGTAATTTATTCAACCCAAAAAGCAT
CTGAAGCATTGGCAAC----------TGAANAACNATTAGNTACNTGNGNTAAAGGNTTA
NCNGGGGCCGNAATTAATCNTGNAAAATCNTCTGAANCTGCNNCNATTAAACAAANAAAA
GGNCCCCNNCNATNAATAATAAAAAAAAAAAAAATAATAGTAATAATAATTAATATTTTA
AAAAAAATAAAATAAAAAAAT
Length of connected seq. 731
Full length Seq ID -
Full length Seq. -
Length of full length seq. -