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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ612
Library SL
(Link to library)
Clone ID SLJ612
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16486-1
Original site URL
Representative seq. ID SLJ612Z
(Link to Original site)
Representative DNA sequence 
>SLJ612 (SLJ612Q) /CSM/SL/SLJ6-A/SLJ612Q.Seq.d/
XXXXXXXXXXGTATTGTTGCCTTATTAAACAGCTATCGTTTAGATAATGGTAAATCAACC
CTCGGTTTCATTAACCCAGTCTTATATGCTGCTTACGCCTCTAACCCAGCTGCCTTCAAT
GATATCACCGTTGGTAACAATTATTGTACTGAAAGCTGTTGTGCTACCACTGGTTTCGTT
GCCACCAAAGGTTGGGATGCTGTCACTGGTTTAGGTTCACCAAATTTCAAACCATTATTA
TCATACATTCAATCTTTAAATTAAATAAATAAAATTATTTAATAATAAAAATAAAATTAA
TAATATTATCTAAAAAT
sequence update 1998. 9. 8
Translated Amino Acid sequence 
---IVALLNSYRLDNGKSTLGFINPVLYAAYASNPAAFNDITVGNNYCTESCCATTGFVA
TKGWDAVTGLGSPNFKPLLSYIQSLN*inkii***k*n**yylk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ycclikqlsfr*w*inprfh*pslicclrl*psclq*yhrw*qlly*kllcyhwfrc
hqrlgcchwfrftkfqtiiiihsifklnk*nyliikikliilskn


Frame B:
---IVALLNSYRLDNGKSTLGFINPVLYAAYASNPAAFNDITVGNNYCTESCCATTGFVA
TKGWDAVTGLGSPNFKPLLSYIQSLN*inkii***k*n**yylk


Frame C:
---llpy*taiv*imvnqpsvsltqsymlltpltqlpsmisplvtiivlkavvlplvslp
pkvgmlslv*vhqisnhyyhtfnl*ik*iklfnnknkinnii*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD867 (VSD867Q) /CSM/VS/VSD8-C/VSD867Q.Seq.d/                        488   e-137
VHQ391 (VHQ391Q) /CSM/VH/VHQ3-D/VHQ391Q.Seq.d/                        488   e-137
VHL361 (VHL361Q) /CSM/VH/VHL3-C/VHL361Q.Seq.d/                        488   e-137
VHL130 (VHL130Q) /CSM/VH/VHL1-B/VHL130Q.Seq.d/                        488   e-137
VHK807 (VHK807Q) /CSM/VH/VHK8-A/VHK807Q.Seq.d/                        488   e-137
VHK260 (VHK260Q) /CSM/VH/VHK2-C/VHK260Q.Seq.d/                        488   e-137
VHH845 (VHH845Q) /CSM/VH/VHH8-B/VHH845Q.Seq.d/                        488   e-137
VHG610 (VHG610Q) /CSM/VH/VHG6-A/VHG610Q.Seq.d/                        488   e-137
VHE252 (VHE252Q) /CSM/VH/VHE2-C/VHE252Q.Seq.d/                        488   e-137
VHB640 (VHB640Q) /CSM/VH/VHB6-B/VHB640Q.Seq.d/                        488   e-137
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U27540|U27540.1 Dictyostelium discoideum vegetative stage specific V4-7 mRNA, partial cds.    36  1.0  3
AC069141|AC069141.4 Mus musculus chromosome 6 clone RP23-23G24 strain C57BL6/J, complete sequence.    42  3.9  1
AL145190|AL145190.1 Anopheles gambiae STS T7 end of clone 10A10 of NotreDame1 library  from strain PEST of Anopheles gambiae (African malaria mosquito).    42  3.9  1
BH400617|BH400617.1 AG-ND-135L10.TR ND-TAM Anopheles gambiae genomic clone AG-ND-135L10 , DNA sequence.    42  3.9  1
BM618459|BM618459.1 17000687439058 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600449662255 5', mRNA sequence.    42  3.9  1
BH373214|BH373214.1 AG-ND-130J1.TF ND-TAM Anopheles gambiae genomic clone AG-ND-130J1, DNA sequence.    42  3.9  1
BH372650|BH372650.1 AG-ND-137D19.TF ND-TAM Anopheles gambiae genomic clone AG-ND-137D19 , DNA sequence.    42  3.9  1
BH390740|BH390740.1 AG-ND-137D19.TF.1 ND-TAM Anopheles gambiae genomic clone AG-ND-137D19, DNA sequence.    42  3.9  1
AL145192|AL145192.1 Anopheles gambiae STS T7 end of clone 10A11 of NotreDame1 library  from strain PEST of Anopheles gambiae (African malaria mosquito).    42  3.9  1
AC145271|AC145271.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone B1140B01, *** SEQUENCING IN PROGRESS ***, 10 ordered pieces.    40     15  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8MZS4) RecName: Full=Physarolisin;          EC=3.4.21.103; Alt...   108   4e-23
U27540_1(U27540|pid:none) Dictyostelium discoideum vegetative st...    86   4e-16
DQ242648_1(DQ242648|pid:none) Phanerochaete chrysosporium family...    79   4e-14
AP007157_241(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    78   1e-13
AJ585109_1(AJ585109|pid:none) Aspergillus fumigatus mRNA for fuS...    77   1e-13
AM920437_1911(AM920437|pid:none) Penicillium chrysogenum Wiscons...    72   8e-12
AC116960_13(AC116960|pid:none) Dictyostelium discoideum chromoso...    72   8e-12
AB276124_1(AB276124|pid:none) Actinophrys sol mRNA for sedolisin...    71   1e-11
(Q55CT0) RecName: Full=Tripeptidyl-peptidase 1;          Short=T...    69   4e-11
AM269954_47(AM269954|pid:none) Aspergillus niger contig An01c007...    66   4e-10
protein update 2009. 6. 6
PSORT 

 psg: 0.72  gvh: 0.49  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SLJ612 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ612Z
3' end seq. 
>SLJ612Z.Seq
----------GTATTGTTGCCTTATTAAACAGCTATCGTTTAGATAATGGTAAATCAACC
CTCGGTTTCATTAACCCAGTCTTATATGCTGCTTACGCCTCTAACCCAGCTGCCTTCAAT
GATATCACCGTTGGTAACAATTATTGTACTGAAAGCTGTTGTGCTACCACTGGTTTCGTT
GCCACCAAAGGTTGGGATGCTGTCACTGGTTTAGGTTCACCAAATTTCAAACCATTATTA
TCATACATTCAATCTTTAAATTAAATAAATAAAATTATTTAATAATAAAAATAAAATTAA
TAATATTATCTAAAAAT
Length of 3' end seq. 307
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -