SLJ605
Library SL
(Link to library)
Clone ID SLJ605
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16284-1
Original site URL
Representative seq. ID SLJ605Z
(Link to Original site)
Representative DNA sequence
>SLJ605 (SLJ605Q) /CSM/SL/SLJ6-A/SLJ605Q.Seq.d/
XXXXXXXXXXATGTTTGGTACCCCAATCATTAATCCACCACAATCTGCCATCCTTGGTAT
GCACGCCATCAAAGATAGACCATACGTTGTCAATGGTCAAGTTGTAGTTAGACCAATCAT
GTATTTAGCTCTTACCTATGATCACAGAATTATCGATGGTAGAGAAGCCGTAACTTTCTT
AAAGAAAATTAAAGATGTTCTCGAAAATCCAGAAAGAATTTTATTAGAATTATAAATTAA
AAATAAAATTTAAAAATAAAATA
sequence update 1998. 9. 8
Translated Amino Acid sequence
---FGTPIINPPQSAILGMHAIKDRPYVVNGQVVVRPIMYLALTYDHRIIDGREAVTFLK
KIKDVLENPERILLEL*iknki*k*n


Translated Amino Acid sequence (All Frames)
Frame A:
---clvpqslihhnlpslvctpskidhtlsmvkl*ldqsci*llpmitelsmvekp*ls*
rklkmfskiqkefy*nyklkikfknki


Frame B:
---vwypnh*sttichpwyarhqr*tircqwsscs*tnhvfssyl*sqnyrw*rsrnflk
en*rcsrksrknfiriin*k*nlkik


Frame C:
---FGTPIINPPQSAILGMHAIKDRPYVVNGQVVVRPIMYLALTYDHRIIDGREAVTFLK
KIKDVLENPERILLEL*iknki*k*n


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFK728 (VFK728Q) /CSM/VF/VFK7-B/VFK728Q.Seq.d/ 379 e-104
VFG821 (VFG821Q) /CSM/VF/VFG8-A/VFG821Q.Seq.d/ 379 e-104
VFE830 (VFE830Q) /CSM/VF/VFE8-B/VFE830Q.Seq.d/ 379 e-104
VFE243 (VFE243Q) /CSM/VF/VFE2-B/VFE243Q.Seq.d/ 379 e-104
SLJ605 (SLJ605Q) /CSM/SL/SLJ6-A/SLJ605Q.Seq.d/ 379 e-104
SLJ536 (SLJ536Q) /CSM/SL/SLJ5-B/SLJ536Q.Seq.d/ 379 e-104
SLI726 (SLI726Q) /CSM/SL/SLI7-B/SLI726Q.Seq.d/ 379 e-104
SLF689 (SLF689Q) /CSM/SL/SLF6-D/SLF689Q.Seq.d/ 379 e-104
SLD435 (SLD435Q) /CSM/SL/SLD4-B/SLD435Q.Seq.d/ 379 e-104
SLB540 (SLB540Q) /CSM/SL/SLB5-B/SLB540Q.Seq.d/ 379 e-104

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 379 e-101 1
CB078246|CB078246.1 hj65b11.g1 Hedyotis terminalis flower - Stage 2 (NYBG) Hedyotis terminalis cDNA clone hj65b11, mRNA sequence. 46 3e-08 2
CA981985|CA981985.1 AGENCOURT_11280681 Wellcome CRC pSK egg Xenopus laevis cDNA clone IMAGE:6870556 5', mRNA sequence. 44 9e-06 2
AL439221|AL439221.1 T3 end of clone BD0AA003C04 of library BD0AA from strain CBS 94 of Candida tropicalis. 56 4e-05 2
AW619253|AW619253.1 612 MARC PBE Sus scrofa cDNA 5', mRNA sequence. 38 3e-04 2
BJ087168|BJ087168.1 Xenopus laevis cDNA clone:XL055k06, 3' end, single read. 44 3e-04 2
BJ049527|BJ049527.1 Xenopus laevis cDNA clone:XL026h03, 3' end, single read. 44 4e-04 2
BQ732365|BQ732365.1 AGENCOURT_8107512 NICHD XGC Emb4 Xenopus laevis cDNA clone IMAGE:5572111 5', mRNA sequence. 44 4e-04 2
R03324|R03324.1 pk05h04.r1 Kuwabara Mixed stage C. briggsae Caenorhabditis briggsae cDNA similar to SP:ODO2_RAT Q01205 DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE COMPONENT, mRNA sequence. 46 7e-04 2
AV866549|AV866549.1 Ciona intestinalis cDNA, clone:rcieg47a23, 3' end, single read. 54 8e-04 1
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000237_528(CP000237|pid:none) Neorickettsia sennetsu strain Mi... 112 3e-24
BC045500_1(BC045500|pid:none) Danio rerio dihydrolipoamide S-suc... 112 5e-24
CP000356_2210(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 112 5e-24
BC065943_1(BC065943|pid:none) Danio rerio dihydrolipoamide S-suc... 112 5e-24
(Q9N0F1) RecName: Full=Dihydrolipoyllysine-residue succinyltrans... 111 9e-24
AK149664_1(AK149664|pid:none) Mus musculus bone marrow macrophag... 111 9e-24
AE004439_278(AE004439|pid:none) Pasteurella multocida subsp. mul... 110 1e-23
DQ086164_1(DQ086164|pid:none) Ictalurus punctatus dihydrolipoami... 110 1e-23
(Q01205) RecName: Full=Dihydrolipoyllysine-residue succinyltrans... 109 3e-23
A41015(A41015) dihydrolipoamide S-succinyltransferase (EC 2.3.1.... 109 3e-23
protein update 2009. 6. 6
PSORT

psg: 0.90 gvh: 0.31 alm: 0.41 top: 0.57 tms: 0.00 mit: 0.25 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: cytoskeletal

>> prediction for SLJ605 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ605Z
3' end seq.
>SLJ605Z.Seq
----------ATGTTTGGTACCCCAATCATTAATCCACCACAATCTGCCATCCTTGGTAT
GCACGCCATCAAAGATAGACCATACGTTGTCAATGGTCAAGTTGTAGTTAGACCAATCAT
GTATTTAGCTCTTACCTATGATCACAGAATTATCGATGGTAGAGAAGCCGTAACTTTCTT
AAAGAAAATTAAAGATGTTCTCGAAAATCCAGAAAGAATTTTATTAGAATTATAAATTAA
AAATAAAATTTAAAAATAAAATA
Length of 3' end seq. 253
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -