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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ525
Library SL
(Link to library)
Clone ID SLJ525
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID SLJ525Z
(Link to Original site)
Representative DNA sequence 
>SLJ525 (SLJ525Q) /CSM/SL/SLJ5-B/SLJ525Q.Seq.d/
XXXXXXXXXXAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAAC
ATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGANCCTTAACCTTAA
GAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCA
TCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAAT
ATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGA
GAGTTATCAAACATA
sequence update 1998. 9. 8
Translated Amino Acid sequence 
---KTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRXLTLRKSITTQTGRAALEKITLKFI
DTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikh
Translated Amino Acid sequence (All Frames) 
Frame A:
---KTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRXLTLRKSITTQTGRAALEKITLKFI
DTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikh


Frame B:
---rlsiqwvvslttvwlnmns*clkvvllvqerxp*p*ervsplklvvlpsrkslsnss
ippaslvtvfikplkirlnisasrnqdqlrlkfnkldfrelsni


Frame C:
---dyqsngwfrslryg*t*ilna*rlccwskkexlnlkkeyhhsnwsccprenhsqihr
ylqqvwsrsssnr*r*d*ifrrqeikin*glnsin*isesyqt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI163 (VSI163Q) /CSM/VS/VSI1-C/VSI163Q.Seq.d/                        599   e-170
VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/                        599   e-170
VFF813 (VFF813Q) /CSM/VF/VFF8-A/VFF813Q.Seq.d/                        599   e-170
VFC683 (VFC683Q) /CSM/VF/VFC6-D/VFC683Q.Seq.d/                        599   e-170
SLK737 (SLK737Q) /CSM/SL/SLK7-B/SLK737Q.Seq.d/                        599   e-170
SLJ525 (SLJ525Q) /CSM/SL/SLJ5-B/SLJ525Q.Seq.d/                        599   e-170
SLI874 (SLI874Q) /CSM/SL/SLI8-D/SLI874Q.Seq.d/                        599   e-170
SLI739 (SLI739Q) /CSM/SL/SLI7-B/SLI739Q.Seq.d/                        599   e-170
SLI619 (SLI619Q) /CSM/SL/SLI6-A/SLI619Q.Seq.d/                        599   e-170
SLI469 (SLI469Q) /CSM/SL/SLI4-C/SLI469Q.Seq.d/                        599   e-170
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds.   462  e-162  2
BQ590105|BQ590105.1 E012844-024-019-M20-T7 MPIZ-ADIS-024-storage root Beta vulgaris cDNA clone 024-019-M20 3-PRIME, mRNA sequence.    46  9e-05  2
CA904584|CA904584.1 PCS01796X5 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 60S ribosomal protein L3, mRNA sequence.    42  4e-04  2
CA904604|CA904604.1 PCSC15981 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 60S ribosomal protein L3, mRNA sequence.    42  4e-04  2
CA904596|CA904596.1 PCSC11746 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 60S ribosomal protein L3, mRNA sequence.    42  4e-04  2
CA899885|CA899885.1 PCS00240M13R Scarlet Runner Bean Suspensor Region pCR2.1 Phaseolus coccineus cDNA 5' similar to 60S ribosomal protein L3, mRNA sequence.    42  5e-04  2
BI379782|BI379782.1 BFLG1_001413 Amphioxus 5-6 hrs cDNA library (Name convention: BFLG or MPMGp498) Branchiostoma floridae cDNA clone MPMGp498A10114 5', mRNA sequence.    52  0.004  1
BI378720|BI378720.1 BFLG1_000351 Amphioxus 5-6 hrs cDNA library (Name convention: BFLG or MPMGp498) Branchiostoma floridae cDNA clone MPMGp498A10114 5', mRNA sequence.    52  0.004  1
BE776610|BE776610.1 MY-18-B-10 PinfestansMY Phytophthora infestans cDNA, mRNA sequence.    52  0.004  1
BI379783|BI379783.1 BFLG1_001414 Amphioxus 5-6 hrs cDNA library (Name convention: BFLG or MPMGp498) Branchiostoma floridae cDNA clone MPMGp498G23118 5', mRNA sequence.    52  0.004  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   177   8e-44
CP000581_50(CP000581|pid:none) Ostreococcus lucimarinus CCE9901 ...   118   7e-26
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   118   7e-26
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...   116   3e-25
AK151084_1(AK151084|pid:none) Mus musculus bone marrow macrophag...   114   1e-24
AK151142_1(AK151142|pid:none) Mus musculus bone marrow macrophag...   114   1e-24
AB099068_1(AB099068|pid:none) Bos taurus mRNA for similar to rib...   114   1e-24
AB374542_1(AB374542|pid:none) Solea senegalensis RPL3 mRNA for r...   114   1e-24
BC151555_1(BC151555|pid:none) Bos taurus ribosomal protein L3, m...   114   1e-24
(P39872) RecName: Full=60S ribosomal protein L3;  &BC102253_1(BC...   114   1e-24
protein update 2009. 6. 6
PSORT 

 psg: 0.85  gvh: 0.39  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.08
 nuc: 0.21  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SLJ525 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ525Z
3' end seq. 
>SLJ525Z.Seq
----------AAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAAC
ATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGANCCTTAACCTTAA
GAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCA
TCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAAT
ATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGA
GAGTTATCAAACATA
Length of 3' end seq. 305
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -