SLJ468
Library SL
(Link to library)
Clone ID SLJ468
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLJ468P
(Link to Original site)
Representative DNA sequence
>SLJ468 (SLJ468Q) /CSM/SL/SLJ4-C/SLJ468Q.Seq.d/
CCCACGCGTCCGGGTTGGTTGACCGGCGGTGTTACTGGTGGCAATAGTGGAGGTGCTACT
GGAGGTAATAGCNGTGGTGCTACTGGAGGTAATAGTGGAGGTGCTACTGGAGGAAATAGC
GGTGGTGCTACTGGAGGCAATAGCGGCGGTGCTTCATCATCTGGTGGCAATAGTGGAGGT
GCTACAGGAGGTXXXXXXXXXXCACACCAACGCCANCCTCTTCAGNTGANGANCCAGCTG
CTGGTGGCGANGATTCAAGTGCAATCNCCAAATATAGTATTCAATCATTTGGTATCTTTG
TTTTATCAATGATAATATATTTAGTAATTTAAAATAACTAATATTCTTTATATATATATG
AAATTAAATTATTATTATTAAAAAAAATTTTAAAATTAAAAAATT
sequence update 1999. 3. 8
Translated Amino Acid sequence
PTRPGWLTGGVTGGNSGGATGGNSXGATGGNSGGATGGNSGGATGGNSGGASSSGGNSGG
ATGG---

---TPTPXSSXXXPAAGGXDSSAIXKYSIQSFGIFVLSMIIYLVI*nn*yslyiyeikll
llkkilklkn


Translated Amino Acid sequence (All Frames)
Frame A:
PTRPGWLTGGVTGGNSGGATGGNSXGATGGNSGGATGGNSGGATGGNSGGASSSGGNSGG
ATGG---

---htnaxlfx*xxscwwrxfkcnxqi*ysiiwylcfindnifsnlk*liffiyi*n*ii
iikknfkikk

Frame B:
prvrvg*pavllvaivevlleviavvllevivevlleeiavvlleaiaavlhhlvaivev
lqe---

---TPTPXSSXXXPAAGGXDSSAIXKYSIQSFGIFVLSMIIYLVI*nn*yslyiyeikll
llkkilklkn

Frame C:
hasglvdrrcywwq*wrcywr**xwcywr**wrcywrk*rwcywrq*rrcfiiwwq*wrc
yrr---

---hqrxplqxxxqllvaxiqvqspnivfnhlvslfyq**yi**fkitnilyiymklnyy
y*kkf*n*ki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLJ468 (SLJ468Q) /CSM/SL/SLJ4-C/SLJ468Q.Seq.d/ 533 e-151
SHJ602 (SHJ602Q) /CSM/SH/SHJ6-A/SHJ602Q.Seq.d/ 301 4e-81
SLG214 (SLG214Q) /CSM/SL/SLG2-A/SLG214Q.Seq.d/ 248 6e-65
SLJ757 (SLJ757Q) /CSM/SL/SLJ7-C/SLJ757Q.Seq.d/ 212 3e-54
SSG715 (SSG715Q) /CSM/SS/SSG7-A/SSG715Q.Seq.d/ 198 5e-50
SLK846 (SLK846Q) /CSM/SL/SLK8-B/SLK846Q.Seq.d/ 198 5e-50
SLK788 (SLK788Q) /CSM/SL/SLK7-D/SLK788Q.Seq.d/ 198 5e-50
SLK604 (SLK604Q) /CSM/SL/SLK6-A/SLK604Q.Seq.d/ 198 5e-50
SLK304 (SLK304Q) /CSM/SL/SLK3-A/SLK304Q.Seq.d/ 198 5e-50
SLJ545 (SLJ545Q) /CSM/SL/SLJ5-B/SLJ545Q.Seq.d/ 198 5e-50

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF312775|AF312775.1 Tetrahymena thermophila macronuclear immobilization antigen LD (SerLD) mRNA, complete cds. 30 0.46 4
BG632067|BG632067.1 GH02610.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH02610 3, mRNA sequence. 38 1.7 2
BG632922|BG632922.1 GH16149.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH16149 3 similar to CG2052: FBan0002052 'transcription factor' -AND- 'transcription factor' located on: 4 102B5-102B6;: 04/10/2001, mRNA sequence. 38 2.7 2
AW940235|AW940235.1 GH06573.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06573 3, mRNA sequence. 38 3.1 2
AC124425|AC124425.2 Mus musculus chromosome UNK clone RP24-230N16, WORKING DRAFT SEQUENCE, 5 unordered pieces. 42 5.0 1
CA984835|CA984835.1 AGENCOURT_11280573 Wellcome CRC pSK egg Xenopus laevis cDNA clone IMAGE:6869158 5', mRNA sequence. 42 5.0 1
BM191004|BM191004.1 daj30g04.y1 NICHD XGC OO1 Xenopus laevis cDNA clone IMAGE:5078190 5' similar to SW:Y269_HUMAN Q92558 HYPOTHETICAL PROLINE-RICH PROTEIN KIAA0269. ;, mRNA sequence. 42 5.0 1
BX470188|BX470188.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-206F10. 42 5.0 1
BM638224|BM638224.1 17000687566264 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600449630010 5', mRNA sequence. 42 5.0 1
CD256678|CD256678.1 AGENCOURT_14158068 NICHD_XGC_Brn1 Xenopus laevis cDNA clone IMAGE:6954110 5', mRNA sequence. 42 5.0 1
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB... 70 2e-11

protein update 2009. 1.25
PSORT

psg: 0.75 gvh: 0.43 alm: 0.24 top: 0.53 tms: 0.07 mit: -0.02 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
8.0 %: Golgi
8.0 %: endoplasmic reticulum
8.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for SLJ468 is cyt

5' end seq. ID SLJ468F
5' end seq.
>SLJ468F.Seq
CCCACGCGTCCGGGTTGGTTGACCGGCGGTGTTACTGGTGGCAATAGTGGAGGTGCTACT
GGAGGTAATAGCNGTGGTGCTACTGGAGGTAATAGTGGAGGTGCTACTGGAGGAAATAGC
GGTGGTGCTACTGGAGGCAATAGCGGCGGTGCTTCATCATCTGGTGGCAATAGTGGAGGT
GCTACAGGAGGT----------
Length of 5' end seq. 192
3' end seq. ID SLJ468Z
3' end seq.
>SLJ468Z.Seq
----------CACACCAACGCCANCCTCTTCAGNTGANGANCCAGCTGCTGGTGGCGANG
ATTCAAGTGCAATCNCCAAATATAGTATTCAATCATTTGGTATCTTTGTTTTATCAATGA
TAATATATTTAGTAATTTAAAATAACTAATATTCTTTATATATATATGAAATTAAATTAT
TATTATTAAAAAAAATTTTAAAATTAAAAAATT
Length of 3' end seq. 203
Connected seq. ID SLJ468P
Connected seq.
>SLJ468P.Seq
CCCACGCGTCCGGGTTGGTTGACCGGCGGTGTTACTGGTGGCAATAGTGGAGGTGCTACT
GGAGGTAATAGCNGTGGTGCTACTGGAGGTAATAGTGGAGGTGCTACTGGAGGAAATAGC
GGTGGTGCTACTGGAGGCAATAGCGGCGGTGCTTCATCATCTGGTGGCAATAGTGGAGGT
GCTACAGGAGGT----------CACACCAACGCCANCCTCTTCAGNTGANGANCCAGCTG
CTGGTGGCGANGATTCAAGTGCAATCNCCAAATATAGTATTCAATCATTTGGTATCTTTG
TTTTATCAATGATAATATATTTAGTAATTTAAAATAACTAATATTCTTTATATATATATG
AAATTAAATTATTATTATTAAAAAAAATTTTAAAATTAAAAAATT
Length of connected seq. 395
Full length Seq ID -
Full length Seq. -
Length of full length seq. -