>SLJ376 (SLJ376Q) /CSM/SL/SLJ3-D/SLJ376Q.Seq.d/
XXXXXXXXXXAGGTATCAACTGTTCATTCTGAAACTGATGGTCAAATCACCAAAGATAAA
TTAGAAAAATTCATCAATCCTTCTCAAATTAAAGATACTAAAGTTTTCATCTGTGGTCCA
GTATCTTTTATGTCTGCAATTAATAAACAATTAATTGAATTAGGTTATCCAAAAGAAAAT
ATTTCTTATGAAATTTTTGGTCCATTAACAAATGTATAAAAAAAAATAAAAAATAAAAAA
TAAAAAAAATAACATATTTAAAATAAATAAATGATA

---VSTVHSETDGQITKDKLEKFINPSQIKDTKVFICGPVSFMSAINKQLIELGYPKENI
SYEIFGPLTNV*kkiknkk*kk*hi*nk*mi

Frame A:
---gincsf*n*wsnhqr*irkihqsfsn*ry*sfhlwssifyvcn**tin*irlskrky
fl*nfwsinkcikknkk*kikkitylk*ind


Frame B:
---VSTVHSETDGQITKDKLEKFINPSQIKDTKVFICGPVSFMSAINKQLIELGYPKENI
SYEIFGPLTNV*kkiknkk*kk*hi*nk*mi


Frame C:
---yqlfilklmvkspkin*knssillklkilkfssvvqyllclqlinn*ln*viqkkif
lmkflvh*qmykkk*kiknkknnifkink*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH228 (VSH228Q) /CSM/VS/VSH2-B/VSH228Q.Seq.d/                        410   e-114
VSA370 (VSA370Q) /CSM/VS/VSA3-C/VSA370Q.Seq.d/                        410   e-114
VFF225 (VFF225Q) /CSM/VF/VFF2-B/VFF225Q.Seq.d/                        410   e-114
SLJ376 (SLJ376Q) /CSM/SL/SLJ3-D/SLJ376Q.Seq.d/                        410   e-114
SLA171 (SLA171Q) /CSM/SL/SLA1-C/SLA171Q.Seq.d/                        410   e-114
FCL-AA17 (FCL-AA17Q) /CSM/FCL/FCL-AA/FCL-AA17Q.Seq.d/                 410   e-114
VSA808 (VSA808Q) /CSM/VS/VSA8-A/VSA808Q.Seq.d/                        408   e-113
VSD490 (VSD490Q) /CSM/VS/VSD4-D/VSD490Q.Seq.d/                        404   e-112
SLC715 (SLC715Q) /CSM/SL/SLC7-A/SLC715Q.Seq.d/                        404   e-112
SSI884 (SSI884Q) /CSM/SS/SSI8-D/SSI884Q.Seq.d/                        394   e-109

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB025583|AB025583.1 Dictyostelium discoideum DdFHa mRNA for flavohemoglobin, complete cds.   410  e-117  2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          36  0.018  7
AC122041|AC122041.4 Mus musculus chromosome 16 clone RP24-443H19, complete sequence.    44  0.065  6
AL735368|AL735368.1 Danio rerio genomic clone DKEY-7F9, genomic survey sequence.    44  0.075  2
BM093255|BM093255.1 saj06h02.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-9939 5', mRNA sequence.    42  0.24  2
BE329911|BE329911.1 so71b06.y1 Gm-c1040 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1040-1068 5', mRNA sequence.    42  0.24  2
BI424033|BI424033.1 sah65a10.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-3092 5', mRNA sequence.    42  0.25  2
BU548483|BU548483.1 GM880017A20D01 Gm-r1088 Glycine max cDNA clone Gm-r1088-6290 3', mRNA sequence.    42  0.32  2
AL445923|AL445923.10 Human DNA sequence from clone RP11-117N4 on chromosome 13.    34  0.45  5
AC124637|AC124637.3 Mus musculus clone RP23-458B6, WORKING DRAFT SEQUENCE, 14 unordered pieces.    36  0.53  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB025584_1(AB025584|pid:none) Dictyostelium discoideum DdFHb mRN...    77   2e-13
CU458896_3107(CU458896|pid:none) Mycobacterium abscessus chromos...    55   8e-07
AM295250_679(AM295250|pid:none) Staphylococcus carnosus subsp. c...    54   2e-06
CU928158_591(CU928158|pid:none) Escherichia fergusonii ATCC 3546...    51   1e-05
CP000817_4223(CP000817|pid:none) Lysinibacillus sphaericus C3-41...    51   1e-05
CP000753_1062(CP000753|pid:none) Shewanella baltica OS185, compl...    50   2e-05
(Q7MH09) RecName: Full=Flavohemoprotein; AltName: Full=Hemoglobi...    50   2e-05
AP009152_328(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, c...    50   3e-05
CP000020_2341(CP000020|pid:none) Vibrio fischeri ES114 chromosom...    50   3e-05
CP000038_2462(CP000038|pid:none) Shigella sonnei Ss046, complete...    49   5e-05

 psg: 0.75  gvh: 0.31  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SLJ376 is cyt

>SLJ376Z.Seq
----------AGGTATCAACTGTTCATTCTGAAACTGATGGTCAAATCACCAAAGATAAA
TTAGAAAAATTCATCAATCCTTCTCAAATTAAAGATACTAAAGTTTTCATCTGTGGTCCA
GTATCTTTTATGTCTGCAATTAATAAACAATTAATTGAATTAGGTTATCCAAAAGAAAAT
ATTTCTTATGAAATTTTTGGTCCATTAACAAATGTATAAAAAAAAATAAAAAATAAAAAA
TAAAAAAAATAACATATTTAAAATAAATAAATGATA