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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ344
Library SL
(Link to library)
Clone ID SLJ344
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SLJ344P
(Link to Original site)
Representative DNA sequence 
>SLJ344 (SLJ344Q) /CSM/SL/SLJ3-B/SLJ344Q.Seq.d/
AGGCACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTTACAT
TTGTACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAAGTTC
TTCATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATACTAC
TACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACA
TACTACTACTGGTXXXXXXXXXXTCAATGGTAATGATGAATTTGAAATTGATNTTGAAGG
TGATTTCCAAGAAGATGATTTCGAAGAAGAATNTGCATTTTATTAAATTAAACTTTTTTT
CATAAAAAAATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACNTTATA
ATATTACTTTAATAACAATACTTTTTTTTAATATTCAAAGACTTTACAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACAAACCATAAACAAAACTAAAAATAAATTAAAAAAAA
sequence update 1999. 3. 5
Translated Amino Acid sequence 
GTSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSSTTGSHTTTGGSTTGSHTT
TGGSTTGSHTTTGGSTTGSHTTTG---

---SMVMMNLKLXLKVISKKMISKKNXHFIKLNFFS*knnnnnlitnhyhq**xynitli
tilffniqrlykkkkkkkkkknkp*tklkin*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
rhirwytrfl**s*lskwlhlynsksissmcfsiilfvkffinhwltyyhwwfnhwltyy
ywwfnhwltyyywwfnhwltyyyw---

---SMVMMNLKLXLKVISKKMISKKNXHFIKLNFFS*knnnnnlitnhyhq**xynitli
tilffniqrlykkkkkkkkkknkp*tklkin*kk

Frame B:
GTSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSSTTGSHTTTGGSTTGSHTT
TGGSTTGSHTTTGGSTTGSHTTTG---

---qw***i*n*x*r*fprr*frrrxcilln*tffhkkiiiii**liiiinnnxiill**
qyfflifkdftkkkkkkkkkktnhkqn*k*ikk

Frame C:
ahqvvhqvlviklivqmvtfvq**in*qyvflhhplrqvlhqplahilplvvqplahill
lvvqplahilllvvqplahilll---

---ngndefeidxegdfqeddfeeexafy*iklffikk****fnn*slssiitl*yyfnn
ntff*ysktlqkkkkkkkkkkqtinktknklkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ344 (SLJ344Q) /CSM/SL/SLJ3-B/SLJ344Q.Seq.d/                        628   e-179
SFJ181 (SFJ181Q) /CSM/SF/SFJ1-D/SFJ181Q.Seq.d/                        502   e-141
SFH869 (SFH869Q) /CSM/SF/SFH8-C/SFH869Q.Seq.d/                        502   e-141
SFD793 (SFD793Q) /CSM/SF/SFD7-D/SFD793Q.Seq.d/                        502   e-141
CHD579 (CHD579Q) /CSM/CH/CHD5-D/CHD579Q.Seq.d/                        502   e-141
CHD275 (CHD275Q) /CSM/CH/CHD2-D/CHD275Q.Seq.d/                        502   e-141
CHC435 (CHC435Q) /CSM/CH/CHC4-B/CHC435Q.Seq.d/                        502   e-141
CHC396 (CHC396Q) /CSM/CH/CHC3-D/CHC396Q.Seq.d/                        502   e-141
CHB431 (CHB431Q) /CSM/CH/CHB4-B/CHB431Q.Seq.d/                        502   e-141
CHA679 (CHA679Q) /CSM/CH/CHA6-D/CHA679Q.Seq.d/                        502   e-141
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.   486  0.0  4
M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds.   502  e-180  2
X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.    34  0.004  3
BH796510|BH796510.1 1008094E09.y1 1008 - RescueMu Grid I Zea mays genomic, DNA sequence.    36  0.29  2
AC011623|AC011623.5 Arabidopsis thaliana chromosome III BAC F24P17 genomic sequence, complete sequence.    38  0.64  3
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          44  1.7  1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34  2.2  6
AC027190|AC027190.1 Homo sapiens clone RP11-689M18, LOW-PASS SEQUENCE SAMPLING.    42  6.8  1
AC116817|AC116817.4 Mus musculus clone RP24-357I7, WORKING DRAFT SEQUENCE, 4 ordered pieces.    42  6.8  1
AC096476|AC096476.6 Rattus norvegicus clone CH230-68G18, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  6.8  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    77   4e-13
CP001574_180(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    45   9e-04
DQ059011_2(DQ059011|pid:none) Samia cynthia ricini NADH dehydrog...    41   0.021
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    39   0.082
EF101928_410(EF101928|pid:none) Acanthocystis turfacea Chlorella...    38   0.18
AM494940_72(AM494940|pid:none) Leishmania braziliensis chromosom...    36   0.53
T26063(T26063)hypothetical protein W01F3.3 - Caenorhabditis eleg...    36   0.69
Z92815_4(Z92815|pid:none) Caenorhabditis elegans Cosmid W01F3, c...    36   0.69
Z92815_5(Z92815|pid:none) Caenorhabditis elegans Cosmid W01F3, c...    36   0.69
CP000478_3884(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    35   0.90
protein update 2009. 6. 6
PSORT 

 psg: 0.75  gvh: 0.62  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 36.0 %: nuclear
	  8.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SLJ344 is mit
5' end seq. ID SLJ344F
5' end seq. 
>SLJ344F.Seq
AGGCACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTTACAT
TTGTACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAAGTTC
TTCATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATACTAC
TACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACA
TACTACTACTGGT----------
Length of 5' end seq. 253
3' end seq. ID SLJ344Z
3' end seq. 
>SLJ344Z.Seq
----------TCAATGGTAATGATGAATTTGAAATTGATNTTGAAGGTGATTTCCAAGAA
GATGATTTCGAAGAAGAATNTGCATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAA
TAATAATAATTTAATAACTAATCATTATCATCAATAATAACNTTATAATATTACTTTAAT
AACAATACTTTTTTTTAATATTCAAAGACTTTACAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAACAAACCATAAACAAAACTAAAAATAAATTAAAAAAAA
Length of 3' end seq. 273
Connected seq. ID SLJ344P
Connected seq. 
>SLJ344P.Seq
AGGCACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTTACAT
TTGTACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAAGTTC
TTCATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATACTAC
TACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACA
TACTACTACTGGT----------TCAATGGTAATGATGAATTTGAAATTGATNTTGAAGG
TGATTTCCAAGAAGATGATTTCGAAGAAGAATNTGCATTTTATTAAATTAAACTTTTTTT
CATAAAAAAATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACNTTATA
ATATTACTTTAATAACAATACTTTTTTTTAATATTCAAAGACTTTACAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACAAACCATAAACAAAACTAAAAATAAATTAAAAAAAA
Length of connected seq. 526
Full length Seq ID -
Full length Seq. -
Length of full length seq. -