SLJ322
Library SL
(Link to library)
Clone ID SLJ322
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16584-1
Original site URL
Representative seq. ID SLJ322P
(Link to Original site)
Representative DNA sequence
>SLJ322 (SLJ322Q) /CSM/SL/SLJ3-A/SLJ322Q.Seq.d/
AAAAAAAATCATATAAAATGGTAGAAAAAATCATTGTTTCAAATCCAGTTGCTAATCTTT
TAGGTGATGAACAAACCAGAGTTATTTGGGATTTAATTGAAAAGAAATTAATTTTTCCAT
TTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAATTGAGTATCGTGATAAAACCAATG
ATCAAGTTACAATTGATGCAGCCAATGCAATTAAGAGATTAAAAGTTGGTATTAAATGTG
CAACAATTACACCAGACGAAGCACGTGTCACAGAGXXXXXXXXXXAAATGTAAAACGTAC
AGACTACTTAAATACTGAAGAATATATTAATAAGGTTGCCGAATTACTTGTTAGCAAATT
AACTGCATTGTAAGAAATTTTATAAATCTTACTCACTACTACTACCACTACTACTCTACT
TCATTATTTCGTGTTGCGGTCTATCATTCATTTTTCTCCATAAAAATCTCATTTCTTTTT
TTTTATGTTCAAAATTAGTAGTAATAAAATAAAATTGTTATAATTATCCCTT
sequence update 1999. 3. 5
Translated Amino Acid sequence
KKSYKMVEKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFLDLKVETYDLGIEYRDKTND
QVTIDAANAIKRLKVGIKCATITPDEARVTE---

---NVKRTDYLNTEEYINKVAELLVSKLTAL*eil*illtttttttllhyfvlrsiihfs
p*kshffffmfkissnkikll*lsl


Translated Amino Acid sequence (All Frames)
Frame A:
kknhikw*kkslfqiqllif*vmnkpelfgi*lkrn*ffhf*i*klkpmi*elsivikpm
iklqlmqpmqlrd*klvlnvqqlhqtkhvsq---

---kcktyrllky*riy**gcritc*qincivrnfinlthyyyhyystslfrvavyhsff
sikisflffyvqn****nkiviiip

Frame B:
kkii*ngrknhcfkssc*sfr**tnqsylgfn*keinfsifrfks*nl*frn*vs**nq*
ssyn*csqcn*eikswy*mcnnytrrstchr---

---NVKRTDYLNTEEYINKVAELLVSKLTAL*eil*illtttttttllhyfvlrsiihfs
p*kshffffmfkissnkikll*lsl

Frame C:
KKSYKMVEKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFLDLKVETYDLGIEYRDKTND
QVTIDAANAIKRLKVGIKCATITPDEARVTE---

---m*nvqtt*ilknilirlpnyllan*lhckkfyksyslllplllyfiisccglsfifl
hknlisfflcsklvvik*ncynyp

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLJ322 (SLJ322Q) /CSM/SL/SLJ3-A/SLJ322Q.Seq.d/ 696 0.0
VSJ261 (VSJ261Q) /CSM/VS/VSJ2-C/VSJ261Q.Seq.d/ 529 e-149
VFM475 (VFM475Q) /CSM/VF/VFM4-D/VFM475Q.Seq.d/ 529 e-149
VFM444 (VFM444Q) /CSM/VF/VFM4-B/VFM444Q.Seq.d/ 529 e-149
VFM392 (VFM392Q) /CSM/VF/VFM3-D/VFM392Q.Seq.d/ 529 e-149
VFL349 (VFL349Q) /CSM/VF/VFL3-C/VFL349Q.Seq.d/ 529 e-149
VFL180 (VFL180Q) /CSM/VF/VFL1-D/VFL180Q.Seq.d/ 529 e-149
VFG531 (VFG531Q) /CSM/VF/VFG5-B/VFG531Q.Seq.d/ 529 e-149
VFF886 (VFF886Q) /CSM/VF/VFF8-D/VFF886Q.Seq.d/ 529 e-149
VFF796 (VFF796Q) /CSM/VF/VFF7-D/VFF796Q.Seq.d/ 529 e-149

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 393 0.0 6
CD432704|CD432704.1 ETH1_25_H02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_25_H02_A002 5', mRNA sequence. 56 5e-11 2
CB931031|CB931031.1 ri67e04.y1 Meloidogyne chitwoodi J2 pDNR LIB Meloidogyne chitwoodi cDNA 5' similar to TR:O17643 O17643 C34F6.8 PROTEIN. [1] ;, mRNA sequence. 46 5e-07 2
BP190561|BP190561.1 Dugesia japonica cDNA, clone: 04916_HH, expressed in the head. 44 0.001 2
BG732108|BG732108.1 ps20c12.y4 Trichinella spiralis ML CMVsport jasmer Trichinella spiralis cDNA 5' similar to TR:Q9SLK0 Q9SLK0 NADP SPECIFIC ISOCITRATE DEHYDROGENASE. ;, mRNA sequence. 54 0.002 1
BG353063|BG353063.1 ps20c12.y1 Trichinella spiralis ML CMVsport jasmer Trichinella spiralis cDNA 5' similar to SW:IDHP_MEDSA Q40345 ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLAST PRECURSOR ;, mRNA sequence. 54 0.002 1
AC103011|AC103011.5 Rattus norvegicus clone CH230-62C7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 46 0.003 4
AJ437269|AJ437269.1 Cucumis sativus mRNA for isocitrate dehydrogenase. 46 0.004 2
AL162576|AL162576.27 Human DNA sequence from clone RP11-568F20 on chromosome 13. 42 0.017 4
CD474757|CD474757.1 nad03-15ms2-d09 Nad03 Nuphar advena cDNA clone nad03-15ms2-d09 5', mRNA sequence. 42 0.018 2
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q75JR3) RecName: Full=Isocitrate dehydrogenase [NADP] cytoplasm... 171 8e-42
DQ886272_1(DQ886272|pid:none) Gryllus firmus isocitrate dehydrog... 123 2e-27
BA000012_28(BA000012|pid:none) Mesorhizobium loti MAFF303099 DNA... 122 7e-27
CP001074_2374(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 122 7e-27
CP000494_5093(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 120 2e-26
DQ440329_1(DQ440329|pid:none) Aedes aegypti clone AET-426 NADP-d... 120 2e-26
(O14254) RecName: Full=Probable isocitrate dehydrogenase [NADP],... 120 2e-26
AM236080_2632(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 120 2e-26
AM920435_361(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 120 3e-26
CP000661_2344(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17... 120 3e-26
protein update 2009. 6. 6
PSORT

psg: 0.84 gvh: 0.35 alm: 0.44 top: 0.20 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SLJ322 is cyt

5' end seq. ID SLJ322F
5' end seq.
>SLJ322F.Seq
AAAAAAAATCATATAAAATGGTAGAAAAAATCATTGTTTCAAATCCAGTTGCTAATCTTT
TAGGTGATGAACAAACCAGAGTTATTTGGGATTTAATTGAAAAGAAATTAATTTTTCCAT
TTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAATTGAGTATCGTGATAAAACCAATG
ATCAAGTTACAATTGATGCAGCCAATGCAATTAAGAGATTAAAAGTTGGTATTAAATGTG
CAACAATTACACCAGACGAAGCACGTGTCACAGAG----------
Length of 5' end seq. 275
3' end seq. ID SLJ322Z
3' end seq.
>SLJ322Z.Seq
----------AAATGTAAAACGTACAGACTACTTAAATACTGAAGAATATATTAATAAGG
TTGCCGAATTACTTGTTAGCAAATTAACTGCATTGTAAGAAATTTTATAAATCTTACTCA
CTACTACTACCACTACTACTCTACTTCATTATTTCGTGTTGCGGTCTATCATTCATTTTT
CTCCATAAAAATCTCATTTCTTTTTTTTTATGTTCAAAATTAGTAGTAATAAAATAAAAT
TGTTATAATTATCCCTT
Length of 3' end seq. 247
Connected seq. ID SLJ322P
Connected seq.
>SLJ322P.Seq
AAAAAAAATCATATAAAATGGTAGAAAAAATCATTGTTTCAAATCCAGTTGCTAATCTTT
TAGGTGATGAACAAACCAGAGTTATTTGGGATTTAATTGAAAAGAAATTAATTTTTCCAT
TTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAATTGAGTATCGTGATAAAACCAATG
ATCAAGTTACAATTGATGCAGCCAATGCAATTAAGAGATTAAAAGTTGGTATTAAATGTG
CAACAATTACACCAGACGAAGCACGTGTCACAGAG----------AAATGTAAAACGTAC
AGACTACTTAAATACTGAAGAATATATTAATAAGGTTGCCGAATTACTTGTTAGCAAATT
AACTGCATTGTAAGAAATTTTATAAATCTTACTCACTACTACTACCACTACTACTCTACT
TCATTATTTCGTGTTGCGGTCTATCATTCATTTTTCTCCATAAAAATCTCATTTCTTTTT
TTTTATGTTCAAAATTAGTAGTAATAAAATAAAATTGTTATAATTATCCCTT
Length of connected seq. 522
Full length Seq ID -
Full length Seq. -
Length of full length seq. -