>SLJ310 (SLJ310Q) /CSM/SL/SLJ3-A/SLJ310Q.Seq.d/
XXXXXXXXXXGAGCCAAAACAAACGATGATGTCGAAGGTTTCGTTAAATTCCTCGCCGCT
AAAGATTCTGATAGAGTCCTTGGTGCTCATATTATGGGTACCAATGCTGGTGAATTAATT
GGTGAATGTGTTTTAGCTATGGAATATGGTGCCTCATGTGAAGATATTGCAAGAACTTGT
CATGGTCATCCAACTTTATCCGAAGCTGTTAAAGAAGCTGCTATGGATGCTTACGATAAG
CCAATCCATATGTAAATCAATTTTAAAAAAAAAAAAACAAATATTATAAAATAAAAAAAT
ATAAAAATAAAAATAA

---AKTNDDVEGFVKFLAAKDSDRVLGAHIMGTNAGELIGECVLAMEYGASCEDIARTCH
GHPTLSEAVKEAAMDAYDKPIHM*infkkkktniik*knikiki

Frame A:
---sqnkr*crrfr*iprr*rf**spwcsyygyqcw*inw*mcfsygiwclm*rycknls
wssnfirsc*rscygclr*anpyvnqf*kkknkyykikkyknkn


Frame B:
---AKTNDDVEGFVKFLAAKDSDRVLGAHIMGTNAGELIGECVLAMEYGASCEDIARTCH
GHPTLSEAVKEAAMDAYDKPIHM*infkkkktniik*knikiki


Frame C:
---pkqtmmskvslnssplkilieslvlilwvpmlvn*lvnvf*lwnmvphvkilqelvm
viqlypkllkkllwmltisqsicksilkkkkqil*nkki*k*k*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ310 (SLJ310Q) /CSM/SL/SLJ3-A/SLJ310Q.Seq.d/                        502   e-141
AFB828 (AFB828Q) /CSM/AF/AFB8-B/AFB828Q.Seq.d/                        496   e-139
AFB746 (AFB746Q) /CSM/AF/AFB7-B/AFB746Q.Seq.d/                        490   e-138
AFG139 (AFG139Q) /CSM/AF/AFG1-B/AFG139Q.Seq.d/                        484   e-136
AFA620 (AFA620Q) /CSM/AF/AFA6-A/AFA620Q.Seq.d/                        484   e-136
VFL340 (VFL340Q) /CSM/VF/VFL3-B/VFL340Q.Seq.d/                        478   e-134
VFC152 (VFC152Q) /CSM/VF/VFC1-C/VFC152Q.Seq.d/                        472   e-132
AFD276 (AFD276Q) /CSM/AF/AFD2-D/AFD276Q.Seq.d/                        466   e-130
VFL751 (VFL751Q) /CSM/VF/VFL7-C/VFL751Q.Seq.d/                        464   e-130
VFH845 (VFH845Q) /CSM/VF/VFH8-B/VFH845Q.Seq.d/                        464   e-130

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX489387|AX489387.1 Sequence 6687 from Patent WO02053728.         62  2e-06  2
BM493927|BM493927.1 NXLV_071_F02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV_071_F02 5' similar to Arabidopsis thaliana sequence At1g48030 lipoamide dehydrogenase precursor see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence.    42  2e-06  2
AR180935|AR180935.1 Sequence 7 from patent US 6333164.            62  2e-06  2
BQ634402|BQ634402.1 NXRV068_E06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV068_E06 5' similar to Arabidopsis thaliana sequence At1g48030 lipoamide dehydrogenase precursor see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence.    42  2e-06  2
BI416760|BI416760.1 hasp002xc23f Heterobasidion annosum - Scots pine infection stage subtraction cDNA library (hasp) Pinus sylvestris/Heterobasidion annosum cDNA clone hasp002xc23f, mRNA sequence.    42  3e-06  2
BI740850|BI740850.1 gc86d06.y1 Moss EST library PPN Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPN260812 5' similar to TR:Q9ZRQ0 Q9ZRQ0 2-OXOGLUTARATE DEHYDROGENASE, E3 SUBUNIT ;, mRNA sequence.    38  5e-06  3
CA964574|CA964574.1 CcLX04a14p22f1 Carp mixed tissue library 1 Cyprinus carpio cDNA clone 14p22 5', mRNA sequence.    60  2e-05  1
BJ167353|BJ167353.1 Physcomitrella patens subsp. patens cDNA clone:pph14n22, 3' end, single read.    38  3e-05  3
CB094338|CB094338.1 hx18f11.b1 Gingko microsporophyll (NYBG) Ginkgo biloba cDNA clone hx18f11, mRNA sequence.    44  3e-05  2
BJ165027|BJ165027.1 Physcomitrella patens subsp. patens cDNA clone:pph2p07, 3' end, single read.    36  5e-05  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382130_836(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...   123   2e-27
AF295339_1(AF295339|pid:none) Solanum tuberosum dihydrolipoamide...   121   8e-27
EU616551_1(EU616551|pid:none) Capsicum annuum putative branched-...   121   8e-27
AP007171_417(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...   120   1e-26
AF542182_1(AF542182|pid:none) Lycopersicon esculentum dihydrolip...   119   4e-26
AY710429_12(AY710429|pid:none) Cryptococcus gattii strain E566 M...   118   6e-26
AF542528_19(AF542528|pid:none) Cryptococcus neoformans var. grub...   117   2e-25
AY710430_14(AY710430|pid:none) Cryptococcus gattii strain WM276 ...   117   2e-25
DQ674546_1(DQ674546|pid:none) Coccidioides posadasii dihydrolipo...   116   2e-25
CP000501_129(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...   115   5e-25

 psg: 0.75  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SLJ310 is cyt

>SLJ310Z.Seq
----------GAGCCAAAACAAACGATGATGTCGAAGGTTTCGTTAAATTCCTCGCCGCT
AAAGATTCTGATAGAGTCCTTGGTGCTCATATTATGGGTACCAATGCTGGTGAATTAATT
GGTGAATGTGTTTTAGCTATGGAATATGGTGCCTCATGTGAAGATATTGCAAGAACTTGT
CATGGTCATCCAACTTTATCCGAAGCTGTTAAAGAAGCTGCTATGGATGCTTACGATAAG
CCAATCCATATGTAAATCAATTTTAAAAAAAAAAAAACAAATATTATAAAATAAAAAAAT
ATAAAAATAAAAATAA