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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ251
Library SL
(Link to library)
Clone ID SLJ251
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13343-1|Contig-U15969-1
Original site URL
Representative seq. ID SLJ251P
(Link to Original site)
Representative DNA sequence 
>SLJ251 (SLJ251Q) /CSM/SL/SLJ2-C/SLJ251Q.Seq.d/
AAAGCAATATTTATTTAATTTTTTAAAAAAAAAGAATCAAATAAAATAGAGTAACAATAT
ATTTTTTTTAAATAAAGAAGATCAGATATTAGTGATGAGTGATGATTTAGGTAGAGAAAC
TAAAAACAATTAAAAAAAGATTATATGAAAGTAAAAAAAAACAAAATATAATAAAACTGA
TATACAXXXXXXXXXXAAGGAAATGGATAAAGAAAAAGAAAAGGAAGAAAAGTCAGAAGA
AAAACCTCAAGAAAAACCTCAAGATAAACCTCAAGAAAAGCCTGAAGAAAAATTAGAAGA
AAAAGATAACAAAAACTTTGAAAATGTAGATAAAGAAAAGAAACAAGAAGAAAATGTAAA
AAATATTAATGGTAAAGAAGAATTAAGTAAAGAATCATCACCACCAATAATAGATAGTAG
TGATAATAATAATAATAATG
sequence update 1999. 3. 5
Translated Amino Acid sequence 
sniylif*kkrik*nrvtiyff*ikkiry***vmi*VEKLKTIKKRLYESKKKQNIIKLI
Y---

---KEMDKEKEKEEKSEEKPQEKPQDKPQEKPEEKLEEKDNKNFENVDKEKKQEENVKNI
NGKEELSKESSPPIIDSSDNNNNN
Translated Amino Acid sequence (All Frames) 
Frame A:
kaifi*ffkkkesnkie*qyiffk*rrsdisde**fr*rn*kqlkkdymkvkknki**n*
yt---

---KEMDKEKEKEEKSEEKPQEKPQDKPQEKPEEKLEEKDNKNFENVDKEKKQEENVKNI
NGKEELSKESSPPIIDSSDNNNNN

Frame B:
kqylfnflkkknqik*snnifflnkedqilvmsddlgretknn*kkii*k*kktkynktd
i---

---rkwikkkkrkksqkknlkknlkinlkkslkkn*kkkitktlkm*ikkrnkkkm*kil
mvkkn*vknhhhq**ivviiiiim

Frame C:
sniylif*kkrik*nrvtiyff*ikkiry***vmi*VEKLKTIKKRLYESKKKQNIIKLI
Y---

---gng*rkrkgrkvrrktsrktsr*tsrka*rkirrkr*qkl*kcr*rketrrkckky*
w*rrik*riittnnr********
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ251 (SLJ251Q) /CSM/SL/SLJ2-C/SLJ251Q.Seq.d/                        129   4e-29
SLF570 (SLF570Q) /CSM/SL/SLF5-C/SLF570Q.Seq.d/                        113   2e-24
FC-AL03 (FC-AL03Q) /CSM/FC/FC-AL/FC-AL03Q.Seq.d/                      113   2e-24
FC-203 (FC-203Q) /CSM/CG/CG-FC/FC-203Q.Seq.d/                         113   2e-24
VSJ268 (VSJ268Q) /CSM/VS/VSJ2-C/VSJ268Q.Seq.d/                         38   0.11
VSI302 (VSI302Q) /CSM/VS/VSI3-A/VSI302Q.Seq.d/                         38   0.11
VSH715 (VSH715Q) /CSM/VS/VSH7-A/VSH715Q.Seq.d/                         38   0.11
VSG476 (VSG476Q) /CSM/VS/VSG4-D/VSG476Q.Seq.d/                         38   0.11
VHH870 (VHH870Q) /CSM/VH/VHH8-C/VHH870Q.Seq.d/                         38   0.11
VHG388 (VHG388Q) /CSM/VH/VHG3-D/VHG388Q.Seq.d/                         38   0.11
own update 2002.12.11
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC138473|AC138473.1 Homo sapiens chromosome 19 clone CTC-512J12, complete sequence.    42  2.4  2
AC084239|0    42  2.4  2
BQ090513|BQ090513.1 rc66d10.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5', mRNA sequence.    32  4.2  3
AC015504|AC015504.4 Homo sapiens clone RP11-21H5, WORKING DRAFT SEQUENCE, 15 unordered pieces.    42  5.5  1
AC021291|AC021291.3 Homo sapiens clone RP11-22H18, WORKING DRAFT SEQUENCE, 28 unordered pieces.    42  5.5  1
AL713990|AL713990.16 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-224N1.    42  5.5  1
AC094323|AC094323.7 Rattus norvegicus clone CH230-3I19, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    42  5.5  1
AC126948|AC126948.4 Rattus norvegicus clone CH230-119A5, WORKING DRAFT SEQUENCE, 8 unordered pieces.    42  5.5  1
AC130858|AC130858.3 Rattus norvegicus clone CH230-231B24, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    42  5.5  1
AC111804|AC111804.4 Rattus norvegicus clone CH230-27O13, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  5.5  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54PU2) RecName: Full=GatC-like protein;                              33   2.3
protein update 2009. 1.25
PSORT 

 psg: 0.38  gvh: -0.09  alm: 0.73  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SLJ251 is nuc
5' end seq. ID SLJ251F
5' end seq. 
>SLJ251F.Seq
AAAGCAATATTTATTTAATTTTTTAAAAAAAAAGAATCAAATAAAATAGAGTAACAATAT
ATTTTTTTTAAATAAAGAAGATCAGATATTAGTGATGAGTGATGATTTAGGTAGAGAAAC
TAAAAACAATTAAAAAAAGATTATATGAAAGTAAAAAAAAACAAAATATAATAAAACTGA
TATACA----------
Length of 5' end seq. 186
3' end seq. ID SLJ251Z
3' end seq. 
>SLJ251Z.Seq
----------AAGGAAATGGATAAAGAAAAAGAAAAGGAAGAAAAGTCAGAAGAAAAACC
TCAAGAAAAACCTCAAGATAAACCTCAAGAAAAGCCTGAAGAAAAATTAGAAGAAAAAGA
TAACAAAAACTTTGAAAATGTAGATAAAGAAAAGAAACAAGAAGAAAATGTAAAAAATAT
TAATGGTAAAGAAGAATTAAGTAAAGAATCATCACCACCAATAATAGATAGTAGTGATAA
TAATAATAATAATG
Length of 3' end seq. 244
Connected seq. ID SLJ251P
Connected seq. 
>SLJ251P.Seq
AAAGCAATATTTATTTAATTTTTTAAAAAAAAAGAATCAAATAAAATAGAGTAACAATAT
ATTTTTTTTAAATAAAGAAGATCAGATATTAGTGATGAGTGATGATTTAGGTAGAGAAAC
TAAAAACAATTAAAAAAAGATTATATGAAAGTAAAAAAAAACAAAATATAATAAAACTGA
TATACA----------AAGGAAATGGATAAAGAAAAAGAAAAGGAAGAAAAGTCAGAAGA
AAAACCTCAAGAAAAACCTCAAGATAAACCTCAAGAAAAGCCTGAAGAAAAATTAGAAGA
AAAAGATAACAAAAACTTTGAAAATGTAGATAAAGAAAAGAAACAAGAAGAAAATGTAAA
AAATATTAATGGTAAAGAAGAATTAAGTAAAGAATCATCACCACCAATAATAGATAGTAG
TGATAATAATAATAATAATG
Length of connected seq. 430
Full length Seq ID -
Full length Seq. -
Length of full length seq. -