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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ243
Library SL
(Link to library)
Clone ID SLJ243
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16366-1
Original site URL
Representative seq. ID SLJ243Z
(Link to Original site)
Representative DNA sequence 
>SLJ243 (SLJ243Q) /CSM/SL/SLJ2-B/SLJ243Q.Seq.d/
XXXXXXXXXXATGATGATATTGAAAAACTCTCTAAAATCTTACCAAAAGCTGCCACCCCT
TCTGTTTCAAAATCTGATTGTAAATCGGTTGGTCTCTCAAAGGTAAACTTTAATACCAAC
GAACAAAGTTCTCATGGTGGTGCTGGTGGTGCTTATCAACAACATGGTGGTGCTTATGGT
CATCAAAAACAACAACAACAAGGTTTTAATCCTGCTGATTTTGGTGCTCAATTTGGTGGT
GGTGGTCCACAACAAGCACAACAGTGTCAACAACAATAAACAATTTAAAAAAAAAAAAAC
TAAAAATATCCAAAAATATCAAAATACCCAAAAATCTAAAATT
sequence update 1998. 9.17
Translated Amino Acid sequence 
---DDIEKLSKILPKAATPSVSKSDCKSVGLSKVNFNTNEQSSHGGAGGAYQQHGGAYGH
QKQQQQGFNPADFGAQFGGGGPQQAQQCQQQ*ti*kkkn*kypkiskypki*n
Translated Amino Acid sequence (All Frames) 
Frame A:
---**y*ktl*nltkschpfcfki*l*igwslkgkl*yqrtkfswwcwwclsttwwclws
skttttrf*sc*fwcsiwwwwsttsttvsttinnlkkkklkisknikipknlk


Frame B:
---DDIEKLSKILPKAATPSVSKSDCKSVGLSKVNFNTNEQSSHGGAGGAYQQHGGAYGH
QKQQQQGFNPADFGAQFGGGGPQQAQQCQQQ*ti*kkkn*kypkiskypki*n


Frame C:
---milknslksyqklppllfqnlivnrlvsqr*tliptnkvlmvvlvvlinnmvvlmvi
knnnnkvlillilvlnlvvvvhnkhnsvnnnkqfkkkktkniqkyqntqkski
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK150 (VSK150Q) /CSM/VS/VSK1-C/VSK150Q.Seq.d/                        547   e-155
SLK513 (SLK513Q) /CSM/SL/SLK5-A/SLK513Q.Seq.d/                        547   e-155
SLJ243 (SLJ243Q) /CSM/SL/SLJ2-B/SLJ243Q.Seq.d/                        547   e-155
SLI160 (SLI160Q) /CSM/SL/SLI1-C/SLI160Q.Seq.d/                        547   e-155
SLH286 (SLH286Q) /CSM/SL/SLH2-D/SLH286Q.Seq.d/                        547   e-155
SLG441 (SLG441Q) /CSM/SL/SLG4-B/SLG441Q.Seq.d/                        547   e-155
SLE413 (SLE413Q) /CSM/SL/SLE4-A/SLE413Q.Seq.d/                        547   e-155
SLE114 (SLE114Q) /CSM/SL/SLE1-A/SLE114Q.Seq.d/                        547   e-155
SLA830 (SLA830Q) /CSM/SL/SLA8-B/SLA830Q.Seq.d/                        547   e-155
SLA810 (SLA810Q) /CSM/SL/SLA8-A/SLA810Q.Seq.d/                        547   e-155
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC119824|AC119824.3 Mus musculus clone RP23-238F5, WORKING DRAFT SEQUENCE, 14 unordered pieces.    40  0.007  5
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    38  0.022  4
BZ217916|BZ217916.1 CH230-467M13.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-467M13, DNA sequence.    36  0.022  3
L29075|L29075.1 Dictyostelium discoideum  G-box binding factor (GBF) mRNA, complete cds.    36  0.064  3
BT000445|BT000445.1 Arabidopsis thaliana Unknown protein (At3g21710) mRNA, complete cds.    30  0.081  4
AC007314|AC007314.3 Homo sapiens clone NH0074G24, complete sequence.    38  0.12  3
AC073533|AC073533.19 Homo sapiens Xp BAC RP11-589J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46  0.14  4
BH534668|BH534668.1 BOGTT57TF BOGT Brassica oleracea genomic clone BOGTT57, DNA sequence.    42  0.14  2
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    40  0.18  6
BI747093|BI747093.1 rm35h01.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to contains element MSR1 repetitive element ;, mRNA sequence.    34  0.20  2
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ED3) RecName: Full=DnaJ homolog subfamily A member 1 homolog;      77   2e-13
protein update 2009. 1.25
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: vacuolar

>> prediction for SLJ243 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ243Z
3' end seq. 
>SLJ243Z.Seq
----------ATGATGATATTGAAAAACTCTCTAAAATCTTACCAAAAGCTGCCACCCCT
TCTGTTTCAAAATCTGATTGTAAATCGGTTGGTCTCTCAAAGGTAAACTTTAATACCAAC
GAACAAAGTTCTCATGGTGGTGCTGGTGGTGCTTATCAACAACATGGTGGTGCTTATGGT
CATCAAAAACAACAACAACAAGGTTTTAATCCTGCTGATTTTGGTGCTCAATTTGGTGGT
GGTGGTCCACAACAAGCACAACAGTGTCAACAACAATAAACAATTTAAAAAAAAAAAAAC
TAAAAATATCCAAAAATATCAAAATACCCAAAAATCTAAAATT
Length of 3' end seq. 333
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -