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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ239
Library SL
(Link to library)
Clone ID SLJ239
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLJ239Z
(Link to Original site)
Representative DNA sequence 
>SLJ239 (SLJ239Q) /CSM/SL/SLJ2-B/SLJ239Q.Seq.d/
XXXXXXXXXXCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGC
CGTCAGAGATNTGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGC
CCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAA
TAATATTTCTTAATAAATAGCATTTTAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 9.17
Translated Amino Acid sequence 
---MCVESFTEYPPLGRFAVRDXRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*inn
is**iaf*kkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---qcvlnpslnthh*vvspsex*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*i
iflnk*hfkkkkkkkk


Frame B:
---nvc*ilh*iptirsfrrqrxetnrrrrchqinrqespr*sr**ercccpikkeink*
yflinsilkkkkkkkk


Frame C:
---MCVESFTEYPPLGRFAVRDXRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*inn
is**iaf*kkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF761 (VSF761Q) /CSM/VS/VSF7-C/VSF761Q.Seq.d/                        383   e-106
VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/                        383   e-106
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/                        383   e-106
VFN474 (VFN474Q) /CSM/VF/VFN4-D/VFN474Q.Seq.d/                        383   e-106
VFN472 (VFN472Q) /CSM/VF/VFN4-C/VFN472Q.Seq.d/                        383   e-106
VFN448 (VFN448Q) /CSM/VF/VFN4-B/VFN448Q.Seq.d/                        383   e-106
VFN340 (VFN340Q) /CSM/VF/VFN3-B/VFN340Q.Seq.d/                        383   e-106
VFN174 (VFN174Q) /CSM/VF/VFN1-D/VFN174Q.Seq.d/                        383   e-106
VFN108 (VFN108Q) /CSM/VF/VFN1-A/VFN108Q.Seq.d/                        383   e-106
VFM668 (VFM668Q) /CSM/VF/VFM6-C/VFM668Q.Seq.d/                        383   e-106
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X55973|X55973.1 D. discoideum EF1-I gene for elongation factor 1 alpha.   295  1e-76  1
X55972|X55972.1 D. discoideum EF1-II gene for elongation factor 1 alpha.   289  7e-75  1
M29934|M29934.1 C.albicans elongation factor 1-alpha (TEF-1) gene, complete cds.   111  4e-21  1
M29935|M29935.1 C.albicans elongation factor 1-alpha (TEF-2) gene, complete cds.   111  4e-21  1
AZ932350|AZ932350.1 474.dhz97h09.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz97h09.s1, DNA sequence.   105  2e-19  1
X00779|X00779.1 Yeast gene for elongation factor 1-alpha (EF-1-alpha).    98  5e-17  1
X78993|X78993.1 S.cerevisiae genomic DNA 70kb region of the right arm of chromosome  II.    98  5e-17  1
AL399730|AL399730.1 T7 end of clone AS0AA017B02 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    98  5e-17  1
Z35987|Z35987.1 S.cerevisiae chromosome II reading frame ORF YBR118w.    98  5e-17  1
AF016242|AF016242.1 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds.    98  5e-17  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...    70   3e-11
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...    70   3e-11
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...    70   3e-11
A29820_1(A29820|pid:none) A.gossypi translation elongation facto...    65   6e-10
FN392319_1522(FN392319|pid:none) Pichia pastoris GS115 chromosom...    65   6e-10
(P54959) RecName: Full=Elongation factor 1-alpha;          Short...    65   6e-10
FB784609_1(FB784609|pid:none) Sequence 3882 from Patent WO200803...    65   6e-10
(P41745) RecName: Full=Elongation factor 1-alpha;          Short...    65   7e-10
AF054510_1(AF054510|pid:none) Yarrowia lipolytica translation el...    65   7e-10
FJ807238_1(FJ807238|pid:none) Euglena gracilis elongation factor...    65   7e-10
protein update 2009. 6. 7
PSORT 

 psg: 0.75  gvh: 0.27  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLJ239 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ239Z
3' end seq. 
>SLJ239Z.Seq
----------CCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGC
CGTCAGAGATNTGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGC
CCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAA
TAATATTTCTTAATAAATAGCATTTTAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 221
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -