SLJ219
Library SL
(Link to library)
Clone ID SLJ219
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15099-1
Original site URL
Representative seq. ID SLJ219Z
(Link to Original site)
Representative DNA sequence
>SLJ219 (SLJ219Q) /CSM/SL/SLJ2-A/SLJ219Q.Seq.d/
XXXXXXXXXXTGAAAAACNTCCAGGTTCNTTNGATATCGTTNACGTTACCGATACTGNTG
GTCATCAATTCGCCANTCGTTTATCTAACGTNTTCATCATTGGTAAAGCCTCCCAAACTT
TCGTCTCCCTCCCAGCCGGTAAAGGTGTCAGACGTTCAAGAGTTGNTGAACGTAACGCTG
CCCTCAAGAGACGTGGTGAAAAAATCGAAACCGTTGCTTAAATAAATAATTAGTTTATTT
TACTAAAANAAAAAAAAAAAAA
sequence update 1998. 9.17
Translated Amino Acid sequence
---KNXQVXXISXTLPILXVINSPXVYLTXSSLVKPPKLSSPSQPVKVSDVQELXNVTLP
SRDVVKKSKPLLK*iislfy*xkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---ekxpgsxdivxvtdtxghqfaxrlsnvfiigkasqtfvslpagkgvrrsrvxernaa
lkrrgekietva*inn*fillkxkkk


Frame B:
---KNXQVXXISXTLPILXVINSPXVYLTXSSLVKPPKLSSPSQPVKVSDVQELXNVTLP
SRDVVKKSKPLLK*iislfy*xkkkk


Frame C:
---ktsrfxxyrxryryxwssirxsfi*rxhhw*slpnfrlppsr*rcqtfksx*t*rcp
qetw*knrnrclnk*lvyftkxkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE514 (VSE514Q) /CSM/VS/VSE5-A/VSE514Q.Seq.d/ 416 e-116
SLK462 (SLK462Q) /CSM/SL/SLK4-C/SLK462Q.Seq.d/ 416 e-116
SLJ219 (SLJ219Q) /CSM/SL/SLJ2-A/SLJ219Q.Seq.d/ 416 e-116
SLI591 (SLI591Q) /CSM/SL/SLI5-D/SLI591Q.Seq.d/ 416 e-116
SLE553 (SLE553Q) /CSM/SL/SLE5-C/SLE553Q.Seq.d/ 416 e-116
FC-AY17 (FC-AY17Q) /CSM/FC/FC-AY/FC-AY17Q.Seq.d/ 416 e-116
FC-AP21 (FC-AP21Q) /CSM/FC/FC-AP/FC-AP21Q.Seq.d/ 416 e-116
FC-AC02 (FC-AC02Q) /CSM/FC/FC-AC/FC-AC02Q.Seq.d/ 416 e-116
FC-054 (FC-054Q) /CSM/CG/CG-FC/FC-054Q.Seq.d/ 416 e-116
FC-BI17 (FC-BI17Q) /CSM/FC/FC-BI/FC-BI17Q.Seq.d/ 394 e-109

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 416 e-113 1
AF039748|AF039748.1 Dictyostelium discoideum 40S ribosomal protein S4 (RPS4) mRNA, complete cds. 416 e-113 1
U15424|U15424.1 Dictyostelium discoideum ribosomal protein S4 mRNA, partial cds. 416 e-113 1
BZ510636|BZ510636.1 BOMQW94TR BO_2_3_KB Brassica oleracea genomic clone BOMQW94, DNA sequence. 44 0.80 1
BZ992396|BZ992396.1 PUDFJ14TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa174D04, DNA sequence. 44 0.80 1
BZ075967|BZ075967.1 lkg93h08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 44 0.80 1
BZ056674|BZ056674.1 lle49c04.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 42 3.2 1
BX244256|BX244256.1 Danio rerio genomic clone DKEY-232G1, genomic survey sequence. 42 3.2 1
AC126732|AC126732.5 Rattus norvegicus clone CH230-6F13, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 42 3.2 1
BX224720|BX224720.1 Danio rerio genomic clone DKEY-53I2, genomic survey sequence. 42 3.2 1
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U15424_1(U15424|pid:none) Dictyostelium discoideum ribosomal pro... 121 7e-27
DQ440018_1(DQ440018|pid:none) Aedes aegypti clone AE-221 40S rib... 70 2e-11
AM048929_1(AM048929|pid:none) Julodis onopordi mRNA for ribosoma... 70 2e-11
EU934288_1(EU934288|pid:none) TSA: Anopheles darlingi AD-195 rib... 70 2e-11
AM048930_1(AM048930|pid:none) Mycetophagus quadripustulatus mRNA... 70 3e-11
AM048931_1(AM048931|pid:none) Sphaerius sp. APV-2005 mRNA for ri... 69 4e-11
DQ445520_1(DQ445520|pid:none) Graphocephala atropunctata isolate... 69 5e-11
EF541363_1(EF541363|pid:none) Lygus lineolaris clone B68 ribosom... 69 5e-11
AM492668_1(AM492668|pid:none) Cotesia congregata mRNA for putati... 69 7e-11
EU116919_1(EU116919|pid:none) Barentsia elongata putative riboso... 69 7e-11
protein update 2009. 6. 6
PSORT

psg: 0.91 gvh: 0.44 alm: 0.43 top: 0.60 tms: 0.00 mit: 0.39 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: mitochondrial
16.0 %: nuclear
8.0 %: cytoskeletal

>> prediction for SLJ219 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ219Z
3' end seq.
>SLJ219Z.Seq
----------TGAAAAACNTCCAGGTTCNTTNGATATCGTTNACGTTACCGATACTGNTG
GTCATCAATTCGCCANTCGTTTATCTAACGTNTTCATCATTGGTAAAGCCTCCCAAACTT
TCGTCTCCCTCCCAGCCGGTAAAGGTGTCAGACGTTCAAGAGTTGNTGAACGTAACGCTG
CCCTCAAGAGACGTGGTGAAAAAATCGAAACCGTTGCTTAAATAAATAATTAGTTTATTT
TACTAAAANAAAAAAAAAAAAA
Length of 3' end seq. 252
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -