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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ213
Library SL
(Link to library)
Clone ID SLJ213
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLJ213P
(Link to Original site)
Representative DNA sequence 
>SLJ213 (SLJ213Q) /CSM/SL/SLJ2-A/SLJ213Q.Seq.d/
GGTGATGGTGTCTCCCACACTGTTCCAATCTATGAAGGTTATGCCTTACCACATGCCATC
TTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAA
CGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGAGATAXXXXXXXXXXT
AGTGATGAAAGTGCTTCACACACAAACAAATATANTTAAATGTGTACTNATAGTAAAATA
TAATTATTNTTACATGGTTGTTNATCTTTATCCGACTNTC
sequence update 1999. 3. 5
Translated Amino Acid sequence 
GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRD---

---VMKVLHTQTNIXKCVLIVKYNYXYMVVXLYPTX
Translated Amino Acid sequence (All Frames) 
Frame A:
GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRD---

---***kcfthkqixlnvyx**niiixtwlxifirl

Frame B:
vmvsptlfqsmkvmpyhmpsyv*i*lvvillit**ks*lnvvthsppllkekssei---

---sdesashtnkyx*mctxski*lxlhgcxslsdx

Frame C:
*wclphcsnl*rlclttchltfrfsws*sy*lhdenln*twllihhhc*krnrqr---

---VMKVLHTQTNIXKCVLIVKYNYXYMVVXLYPTX
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ213 (SLJ213Q) /CSM/SL/SLJ2-A/SLJ213Q.Seq.d/                        466   e-131
VFM807 (VFM807Q) /CSM/VF/VFM8-A/VFM807Q.Seq.d/                        335   2e-91
VFM627 (VFM627Q) /CSM/VF/VFM6-B/VFM627Q.Seq.d/                        335   2e-91
VFJ616 (VFJ616Q) /CSM/VF/VFJ6-A/VFJ616Q.Seq.d/                        335   2e-91
VFJ512 (VFJ512Q) /CSM/VF/VFJ5-A/VFJ512Q.Seq.d/                        335   2e-91
VFI541 (VFI541Q) /CSM/VF/VFI5-B/VFI541Q.Seq.d/                        335   2e-91
VFI269 (VFI269Q) /CSM/VF/VFI2-C/VFI269Q.Seq.d/                        335   2e-91
VFF617 (VFF617Q) /CSM/VF/VFF6-A/VFF617Q.Seq.d/                        335   2e-91
VFF595 (VFF595Q) /CSM/VF/VFF5-D/VFF595Q.Seq.d/                        335   2e-91
VFE460 (VFE460Q) /CSM/VF/VFE4-C/VFE460Q.Seq.d/                        335   2e-91
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   335  e-110  5
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   311  3e-96  4
M14146|M14146.1 D.discoideum actin 15 gene, complete cds.        303  5e-87  3
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   303  9e-84  3
X03281|X03281.1 Dictyostelium discoideum gene for actin A8.      303  6e-79  1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   287  1e-77  3
U25660|U25660.1 Dictyostelium discoideum actin gene, partial cds.   295  1e-76  1
X03282|X03282.1 dictyostelium discoideum gene for actin A12.     287  3e-74  1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   264  5e-67  1
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   264  1e-64  3
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB126023_1(AB126023|pid:none) Chroomonas nordstedtii mRNA for ho...   116   3e-25
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   116   3e-25
(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   116   3e-25
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   116   3e-25
DQ980422_1(DQ980422|pid:none) Goniomonas truncata clone gtactin2...   116   3e-25
AM475102_1(AM475102|pid:none) Vitis vinifera contig VV78X148227....   116   3e-25
DQ980439_1(DQ980439|pid:none) Leucocryptos marina clone lmactin1...   116   3e-25
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   116   3e-25
FJ456916_1(FJ456916|pid:none) Paulinella chromatophora strain M0...   116   3e-25
AF284835_1(AF284835|pid:none) Guillardia theta actin mRNA, parti...   116   3e-25
protein update 2009. 6. 6
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLJ213 is cyt
5' end seq. ID SLJ213F
5' end seq. 
>SLJ213F.Seq
GGTGATGGTGTCTCCCACACTGTTCCAATCTATGAAGGTTATGCCTTACCACATGCCATC
TTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAA
CGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGAGATA----------
Length of 5' end seq. 169
3' end seq. ID SLJ213Z
3' end seq. 
>SLJ213Z.Seq
----------TAGTGATGAAAGTGCTTCACACACAAACAAATATANTTAAATGTGTACTN
ATAGTAAAATATAATTATTNTTACATGGTTGTTNATCTTTATCCGACTNTC
Length of 3' end seq. 101
Connected seq. ID SLJ213P
Connected seq. 
>SLJ213P.Seq
GGTGATGGTGTCTCCCACACTGTTCCAATCTATGAAGGTTATGCCTTACCACATGCCATC
TTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAA
CGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGAGATA----------T
AGTGATGAAAGTGCTTCACACACAAACAAATATANTTAAATGTGTACTNATAGTAAAATA
TAATTATTNTTACATGGTTGTTNATCTTTATCCGACTNTC
Length of connected seq. 270
Full length Seq ID -
Full length Seq. -
Length of full length seq. -