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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ187
Library SL
(Link to library)
Clone ID SLJ187
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLJ187P
(Link to Original site)
Representative DNA sequence 
>SLJ187 (SLJ187Q) /CSM/SL/SLJ1-D/SLJ187Q.Seq.d/
GTGGTTCCTCATCTTCAGGCAGCAATAGTGGTGCCTCATCTTCAGGTGACAATACTGGAG
GTAATAGCGGTTGGTTGACATCATCTGGTGGTAATACTGGAGGTAATAGTGGTGCTGCAA
CCGGAGGAAATAGTGGAGGTAACAGTGGTGCCTCATCTTCAGGAGGTAATAGCGGTGGTG
CTACTGGAGGTAATAGTGGAGGTGTTACTGGAGGAAATAGCGGTGGTGCTXXXXXXXXXX
CAGAAACCCAAGAAATCCAACAAGTAGAGCTCCAACGGTCACACCAACGCCAACCTCTTC
AGCTGAAGAACCAGCTGCTGGTGGCGAAGATTCAAGTGCAATCTCCAAATATAGTATTCA
ATCATTTGGTATCTTTGTTTTATCAATGATAATATATTTAGTAATTTAAAATAACTAATA
TTCTTTATATATATATGAAAATAAAATAATAATAATAAAATAAAAAAAAAAAAAAAATCT
CCAAGTTTCAAAAAAAA
sequence update 1999. 3. 5
Translated Amino Acid sequence 
GSSSSGSNSGASSSGDNTGGNSGWLTSSGGNTGGNSGAATGGNSGGNSGASSSGGNSGGA
TGGNSGGVTGGNSGGA---

---RNPRNPTSRAPTVTPTPTSSAEEPAAGGEDSSAISKYSIQSFGIFVLSMIIYLVI*n
n*yslyiyenkiiiik*kkkknlqvskk
Translated Amino Acid sequence (All Frames) 
Frame A:
vvphlqaaivvphlqvtileviavg*hhlvvilevivvlqpeeivevtvvphlqeviavv
llevivevlleeiavv---

---qkpkksnk*ssnghtnanlfs*rtscwwrrfkcnlqi*ysiiwylcfindnifsnlk
*liffiyi*k*nnnnkikkkkkspsfkk

Frame B:
wflifrqq*wclifr*qywr**rlvdiiww*ywr**wccnrrk*wr*qwclifrr**rwc
ywr**wrcywrk*rwc---

---RNPRNPTSRAPTVTPTPTSSAEEPAAGGEDSSAISKYSIQSFGIFVLSMIIYLVI*n
n*yslyiyenkiiiik*kkkknlqvskk

Frame C:
GSSSSGSNSGASSSGDNTGGNSGWLTSSGGNTGGNSGAATGGNSGGNSGASSSGGNSGGA
TGGNSGGVTGGNSGGA---

---etqeiqqvelqrshqrqplqlknqllvakiqvqspnivfnhlvslfyq**yi**fki
tnilyiymkik****nkkkkkiskfqkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ187 (SLJ187Q) /CSM/SL/SLJ1-D/SLJ187Q.Seq.d/                        710   0.0
CHP711 (CHP711Q) /CSM/CH/CHP7-A/CHP711Q.Seq.d/                        337   1e-91
SLC848 (SLC848Q) /CSM/SL/SLC8-B/SLC848Q.Seq.d/                        325   4e-88
SSG715 (SSG715Q) /CSM/SS/SSG7-A/SSG715Q.Seq.d/                        293   1e-78
SLK604 (SLK604Q) /CSM/SL/SLK6-A/SLK604Q.Seq.d/                        293   1e-78
SLK304 (SLK304Q) /CSM/SL/SLK3-A/SLK304Q.Seq.d/                        293   1e-78
SLJ757 (SLJ757Q) /CSM/SL/SLJ7-C/SLJ757Q.Seq.d/                        293   1e-78
SLI791 (SLI791Q) /CSM/SL/SLI7-D/SLI791Q.Seq.d/                        293   1e-78
SLH864 (SLH864Q) /CSM/SL/SLH8-C/SLH864Q.Seq.d/                        293   1e-78
SLH856 (SLH856Q) /CSM/SL/SLH8-C/SLH856Q.Seq.d/                        293   1e-78
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AZ259832|AZ259832.1 RPCI-23-123I17.TV RPCI-23 Mus musculus genomic clone RPCI-23-123I17 , DNA sequence.    26  0.016  5
AC112016|AC112016.4 Rattus norvegicus clone CH230-13D17, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.6  1
AL360089|AL360089.13 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-284P20.    44  1.6  1
BZ214372|BZ214372.1 CH230-249J2.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-249J2, DNA sequence.    44  1.6  1
AL133478|AL133478.12 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-18O16.    44  1.6  1
AC134191|AC134191.2 Rattus norvegicus clone CH230-251B8, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.6  1
CC274548|CC274548.1 CH261-67L10_RM1.1 CH261 Gallus gallus genomic clone CH261-67L10, DNA sequence.    44  1.6  1
AZ849301|AZ849301.1 2M0150J12R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0150J12 R, DNA sequence.    26  2.6  4
AC116673|AC116673.2 Mus musculus clone RP24-408O23, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46  2.8  2
AC103657|AC103657.3 Mus musculus clone RP23-338D3, WORKING DRAFT SEQUENCE, 20 unordered pieces.    42  6.3  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    61   2e-08
AC069143_9(AC069143|pid:none) Sequence of BAC T29M8 from Arabido...    32   6.3
(Q8RYC8) RecName: Full=Auxin response factor 19; AltName: Full=A...    32   6.3
protein update 2009. 1.25
PSORT 

 psg: 0.77  gvh: 0.40  alm: 0.24  top: 0.73  tms: 0.07  mit: 0.28  mip: 0.14
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SLJ187 is cyt
5' end seq. ID SLJ187F
5' end seq. 
>SLJ187F.Seq
GTGGTTCCTCATCTTCAGGCAGCAATAGTGGTGCCTCATCTTCAGGTGACAATACTGGAG
GTAATAGCGGTTGGTTGACATCATCTGGTGGTAATACTGGAGGTAATAGTGGTGCTGCAA
CCGGAGGAAATAGTGGAGGTAACAGTGGTGCCTCATCTTCAGGAGGTAATAGCGGTGGTG
CTACTGGAGGTAATAGTGGAGGTGTTACTGGAGGAAATAGCGGTGGTGCT----------
Length of 5' end seq. 230
3' end seq. ID SLJ187Z
3' end seq. 
>SLJ187Z.Seq
----------CAGAAACCCAAGAAATCCAACAAGTAGAGCTCCAACGGTCACACCAACGC
CAACCTCTTCAGCTGAAGAACCAGCTGCTGGTGGCGAAGATTCAAGTGCAATCTCCAAAT
ATAGTATTCAATCATTTGGTATCTTTGTTTTATCAATGATAATATATTTAGTAATTTAAA
ATAACTAATATTCTTTATATATATATGAAAATAAAATAATAATAATAAAATAAAAAAAAA
AAAAAAATCTCCAAGTTTCAAAAAAAA
Length of 3' end seq. 257
Connected seq. ID SLJ187P
Connected seq. 
>SLJ187P.Seq
GTGGTTCCTCATCTTCAGGCAGCAATAGTGGTGCCTCATCTTCAGGTGACAATACTGGAG
GTAATAGCGGTTGGTTGACATCATCTGGTGGTAATACTGGAGGTAATAGTGGTGCTGCAA
CCGGAGGAAATAGTGGAGGTAACAGTGGTGCCTCATCTTCAGGAGGTAATAGCGGTGGTG
CTACTGGAGGTAATAGTGGAGGTGTTACTGGAGGAAATAGCGGTGGTGCT----------
CAGAAACCCAAGAAATCCAACAAGTAGAGCTCCAACGGTCACACCAACGCCAACCTCTTC
AGCTGAAGAACCAGCTGCTGGTGGCGAAGATTCAAGTGCAATCTCCAAATATAGTATTCA
ATCATTTGGTATCTTTGTTTTATCAATGATAATATATTTAGTAATTTAAAATAACTAATA
TTCTTTATATATATATGAAAATAAAATAATAATAATAAAATAAAAAAAAAAAAAAAATCT
CCAAGTTTCAAAAAAAA
Length of connected seq. 487
Full length Seq ID -
Full length Seq. -
Length of full length seq. -