SLJ171
Library SL
(Link to library)
Clone ID SLJ171
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09252-1
Original site URL
Representative seq. ID SLJ171P
(Link to Original site)
Representative DNA sequence
>SLJ171 (SLJ171Q) /CSM/SL/SLJ1-C/SLJ171Q.Seq.d/
AATAGCACAAATAAGTATTTTTTAAAAAAATGGCAACGCCTTATAGAGAGAAAATTGAAA
AAATGAGTTCAGAGGTTATTGATAGTAACCCATACTCAAGATTAATGGCATTAAAGAAAA
TGGGTATTGTTAATAATTATGAAAATATTAGAAATTTATCAGTTATAATTGTTGGATTAG
GCGGTATTGGTAGTGTTGCAXXXXXXXXXXATTTTTAAAAAATAATCCAAAAGAAAATTT
AATTCAAAATAATAATAATAATAATATTAATAATAATGAAAAGAAATCTACATATGAAAA
TGAATGGGGTATTGAATTAATTGAAACTTCTGAAGATTTTAATAATAATAATAATAATAA
TAACAAACCTTCAAATAATTCATTCGAATTTTCTTATGATAAAAAACCAACTGTAGAATT
AAATGAACAATCAACTGTGAAAGTAAACTCATCTTCAAATCTTGAAGATTTAATGAATCA
ATTAAAAAATATGAAATAAAATAAAAATAAATTAAAACAATAATAA
sequence update 1999. 3. 5
Translated Amino Acid sequence
*hk*VFFKKMATPYREKIEKMSSEVIDSNPYSRLMALKKMGIVNNYENIRNLSVIIVGLG
GIGSVA---

---FLKNNPKENLIQNNNNNNINNNEKKSTYENEWGIELIETSEDFNNNNNNNNKPSNNS
FEFSYDKKPTVELNEQSTVKVNSSSNLEDLMNQLKNMK*nknklkq**


Translated Amino Acid sequence (All Frames)
Frame A:
nstnkyflkkwqrlierklkk*vqrllivthtqd*wh*rkwvlliimkileiyql*lld*
avlvvl---

---ifkk*skrkfnsk*****y****keiyi*k*mgy*in*nf*rf********qtfk*f
irifl**ktncrik*tincesklifks*rfnesikkyeik*k*iktii

Frame B:
iaqisif*kngnal*ren*knefrgy***pilkingikengyc**l*ky*kfisyncwir
ryw*cc---

---FLKNNPKENLIQNNNNNNINNNEKKSTYENEWGIELIETSEDFNNNNNNNNKPSNNS
FEFSYDKKPTVELNEQSTVKVNSSSNLEDLMNQLKNMK*nknklkq**

Frame C:
*hk*VFFKKMATPYREKIEKMSSEVIDSNPYSRLMALKKMGIVNNYENIRNLSVIIVGLG
GIGSVA---

---f*kiiqkki*fkiiiiiiliimkrnlhmkmngvln*lkllkiliiiiiiitnlqiih
snflmiknql*n*mnnql*k*thlqilki**in*ki*nkikin*nnn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLJ171 (SLJ171Q) /CSM/SL/SLJ1-C/SLJ171Q.Seq.d/ 389 e-107
AFO284 (AFO284Q) /CSM/AF/AFO2-D/AFO284Q.Seq.d/ 38 0.13
AFK291 (AFK291Q) /CSM/AF/AFK2-D/AFK291Q.Seq.d/ 38 0.13
VFL521 (VFL521Q) /CSM/VF/VFL5-A/VFL521Q.Seq.d/ 36 0.52
VFJ562 (VFJ562Q) /CSM/VF/VFJ5-C/VFJ562Q.Seq.d/ 36 0.52
VFF456 (VFF456Q) /CSM/VF/VFF4-C/VFF456Q.Seq.d/ 36 0.52
VFB386 (VFB386Q) /CSM/VF/VFB3-D/VFB386Q.Seq.d/ 36 0.52
SSK353 (SSK353Q) /CSM/SS/SSK3-C/SSK353Q.Seq.d/ 36 0.52
SSF471 (SSF471Q) /CSM/SS/SSF4-C/SSF471Q.Seq.d/ 36 0.52
SHE453 (SHE453Q) /CSM/SH/SHE4-C/SHE453Q.Seq.d/ 36 0.52

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF016439|AF016439.1 Caenorhabditis elegans cosmid R02F11, complete sequence. 34 0.033 4
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 34 0.044 7
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 32 0.047 11
AP003363|AP003363.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 6/9. 38 0.078 6
AC008491|AC008491.6 Homo sapiens chromosome 5 clone CTC-426L22, complete sequence. 40 0.11 4
AC104126|AC104126.2 Homo sapiens chromosome 5 clone RP11-526F3, complete sequence. 46 0.27 2
AC122598|AC122598.4 Rattus norvegicus clone CH230-61D24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 40 0.28 3
AF499727|AF499727.1 Cucumis melo BAC clone PIT92-60K17, complete sequence. 44 0.30 3
AB045358|AB045358.1 Homo sapiens genomic DNA, chromosome 1q22-q23, clone:893n23. 44 0.30 3
AA509340|AA509340.1 MBAFCW1B04T3 Brugia malayi adult female cDNA (SAW96MLW-BmAF) Brugia malayi cDNA clone AFCW1B04 5', mRNA sequence. 46 0.43 1
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C02) RecName: Full=Ubiquitin-like modifier-activating enzyme... 95 1e-18
FJ556993_1(FJ556993|pid:none) Bombyx mori ubiquitin-activating e... 68 1e-10
BC106418_1(BC106418|pid:none) Xenopus laevis hypothetical protei... 65 1e-09
BC151254_1(BC151254|pid:none) Bos taurus ubiquitin-like modifier... 62 6e-09
(Q9GZZ9) RecName: Full=Ubiquitin-like modifier-activating enzyme... 62 8e-09
(Q5R8X4) RecName: Full=Ubiquitin-like modifier-activating enzyme... 62 8e-09
AP005066_10(AP005066|pid:none) Oryza sativa Japonica Group genom... 61 1e-08
AK063549_1(AK063549|pid:none) Oryza sativa Japonica Group cDNA c... 61 1e-08
AB168277_1(AB168277|pid:none) Macaca fascicularis testis cDNA cl... 61 2e-08
AC000098_3(AC000098|pid:none) Arabidopsis thaliana chromosome 1 ... 60 4e-08
protein update 2009. 6. 6
PSORT

psg: 0.48 gvh: 0.51 alm: 0.25 top: 0.47 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.31 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: mitochondrial
16.0 %: nuclear
16.0 %: endoplasmic reticulum
12.0 %: Golgi
4.0 %: peroxisomal
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SLJ171 is cyt

5' end seq. ID SLJ171F
5' end seq.
>SLJ171F.Seq
AATAGCACAAATAAGTATTTTTTAAAAAAATGGCAACGCCTTATAGAGAGAAAATTGAAA
AAATGAGTTCAGAGGTTATTGATAGTAACCCATACTCAAGATTAATGGCATTAAAGAAAA
TGGGTATTGTTAATAATTATGAAAATATTAGAAATTTATCAGTTATAATTGTTGGATTAG
GCGGTATTGGTAGTGTTGCA----------
Length of 5' end seq. 200
3' end seq. ID SLJ171Z
3' end seq.
>SLJ171Z.Seq
----------ATTTTTAAAAAATAATCCAAAAGAAAATTTAATTCAAAATAATAATAATA
ATAATATTAATAATAATGAAAAGAAATCTACATATGAAAATGAATGGGGTATTGAATTAA
TTGAAACTTCTGAAGATTTTAATAATAATAATAATAATAATAACAAACCTTCAAATAATT
CATTCGAATTTTCTTATGATAAAAAACCAACTGTAGAATTAAATGAACAATCAACTGTGA
AAGTAAACTCATCTTCAAATCTTGAAGATTTAATGAATCAATTAAAAAATATGAAATAAA
ATAAAAATAAATTAAAACAATAATAA
Length of 3' end seq. 316
Connected seq. ID SLJ171P
Connected seq.
>SLJ171P.Seq
AATAGCACAAATAAGTATTTTTTAAAAAAATGGCAACGCCTTATAGAGAGAAAATTGAAA
AAATGAGTTCAGAGGTTATTGATAGTAACCCATACTCAAGATTAATGGCATTAAAGAAAA
TGGGTATTGTTAATAATTATGAAAATATTAGAAATTTATCAGTTATAATTGTTGGATTAG
GCGGTATTGGTAGTGTTGCA----------ATTTTTAAAAAATAATCCAAAAGAAAATTT
AATTCAAAATAATAATAATAATAATATTAATAATAATGAAAAGAAATCTACATATGAAAA
TGAATGGGGTATTGAATTAATTGAAACTTCTGAAGATTTTAATAATAATAATAATAATAA
TAACAAACCTTCAAATAATTCATTCGAATTTTCTTATGATAAAAAACCAACTGTAGAATT
AAATGAACAATCAACTGTGAAAGTAAACTCATCTTCAAATCTTGAAGATTTAATGAATCA
ATTAAAAAATATGAAATAAAATAAAAATAAATTAAAACAATAATAA
Length of connected seq. 516
Full length Seq ID -
Full length Seq. -
Length of full length seq. -