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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ164
Library SL
(Link to library)
Clone ID SLJ164
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10711-1
Original site URL
Representative seq. ID SLJ164Z
(Link to Original site)
Representative DNA sequence 
>SLJ164 (SLJ164Q) /CSM/SL/SLJ1-C/SLJ164Q.Seq.d/
XXXXXXXXXXGGGATCCAAGAAATGGTACCACTCATATGATGTTACAAGGTCATAAGAAT
TCTGTAATTAGTGTTGCCCTCTCTCCAAAGAATAATTCTCATGGTGTGTTTGCTACTGGT
TCAGGTGATTTCCGTTCAAGATTATGGAAATATGACTCTTAAACAATTCCACCTCTCTCA
CTCTCCCTCCCCCTCCACTCTCGATAATTCATATTCTTTAATTACAACTTTAATATGAA
sequence update 1998.10.22
Translated Amino Acid sequence 
---iqemvpli*cykviril*LVLPSLQRIILMVCLLLVQVISVQDYGNMTLKQFHLSHS
PSPSTLDNSYSLITTLI*
Translated Amino Acid sequence (All Frames) 
Frame A:
---gskkwyhsydvtrs*efcn*ccplske*fswcvcywfr*fpfkimei*llnnstslt
lpppplsiihil*lql*ye


Frame B:
---dprngtthmmlqghknsvisvalspknnshgvfatgsgdfrsrlwkyds*tipplsl
slplhsr*fiffnynfnm


Frame C:
---iqemvpli*cykviril*LVLPSLQRIILMVCLLLVQVISVQDYGNMTLKQFHLSHS
PSPSTLDNSYSLITTLI*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE426 (VSE426Q) /CSM/VS/VSE4-B/VSE426Q.Seq.d/                        454   e-127
SLJ867 (SLJ867Q) /CSM/SL/SLJ8-C/SLJ867Q.Seq.d/                        454   e-127
SLJ164 (SLJ164Q) /CSM/SL/SLJ1-C/SLJ164Q.Seq.d/                        454   e-127
SLH208 (SLH208Q) /CSM/SL/SLH2-A/SLH208Q.Seq.d/                        454   e-127
SLD223 (SLD223Q) /CSM/SL/SLD2-A/SLD223Q.Seq.d/                        454   e-127
SLA643 (SLA643Q) /CSM/SL/SLA6-B/SLA643Q.Seq.d/                        454   e-127
SLA248 (SLA248Q) /CSM/SL/SLA2-B/SLA248Q.Seq.d/                        452   e-126
AFC717 (AFC717Q) /CSM/AF/AFC7-A/AFC717Q.Seq.d/                        430   e-120
CHF196 (CHF196Q) /CSM/CH/CHF1-D/CHF196Q.Seq.d/                        428   e-119
CFF441 (CFF441Q) /CSM/CF/CFF4-B/CFF441Q.Seq.d/                        418   e-116
own update 2002.12.11
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF079369|AF079369.1 Dictyostelium discoideum transcriptional repressor TUP1 mRNA, complete cds.   446  e-122  1
AL112526|AL112526.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52  5e-06  2
AL112348|AL112348.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    52  5e-06  2
AC122215|AC122215.4 Mus musculus chromosome 16 clone RP23-106M18, complete sequence.    48  0.004  2
AE013485|AE013485.1 Methanosarcina mazei strain Goe1, section 267 of 379 of the complete genome.    40  0.015  2
BF722248|BF722248.1 mab16f11.y1 Soares_NMEBA_branchial_arch Mus musculus cDNA clone IMAGE:3970700 5', mRNA sequence.    48  0.046  1
AC141706|AC141706.1 Apis mellifera clone CH224-56H7, WORKING DRAFT SEQUENCE, 10 unordered pieces.    48  0.046  1
BB175475|BB175475.2 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230056N23, 3' end partial sequence.    48  0.046  1
AC117213|AC117213.3 Mus musculus chromosome 6 clone RP23-305J6, complete sequence.    42  0.055  2
AL831799|AL831799.3 Oryza sativa chromosome 12, . BAC OSJNBa0087A02 of library OSJNBa  from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza  sativa (rice).    46  0.18  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57061_1(U57061|pid:none) Neurospora crassa rco-1 gene, complete...    69   4e-11
AY082798_1(AY082798|pid:none) Penicillium marneffei TupA protein...    68   1e-10
AM270328_15(AM270328|pid:none) Aspergillus niger contig An15c001...    67   2e-10
AP007164_19(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ...    66   3e-10
BT065868_1(BT065868|pid:none) Zea mays full-length cDNA clone ZM...    65   5e-10
AM920427_459(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    65   9e-10
AJ252128_1(AJ252128|pid:none) Yarrowia lipolytica tup1 gene for ...    62   5e-09
AY608603_1(AY608603|pid:none) Exophiala dermatitidis Tup1p gene,...    59   5e-08
(P16649) RecName: Full=General transcriptional corepressor TUP1;...    59   7e-08
X16365_1(X16365|pid:none) Yeast suppressor gene for flocculation...    59   7e-08
protein update 2009. 6. 6
PSORT 

 psg: 0.99  gvh: 0.74  alm: 0.57  top: 0.47  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SLJ164 is exc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ164Z
3' end seq. 
>SLJ164Z.Seq
----------GGGATCCAAGAAATGGTACCACTCATATGATGTTACAAGGTCATAAGAAT
TCTGTAATTAGTGTTGCCCTCTCTCCAAAGAATAATTCTCATGGTGTGTTTGCTACTGGT
TCAGGTGATTTCCGTTCAAGATTATGGAAATATGACTCTTAAACAATTCCACCTCTCTCA
CTCTCCCTCCCCCTCCACTCTCGATAATTCATATTCTTTAATTACAACTTTAATATGAA
Length of 3' end seq. 229
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -