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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ161
Library SL
(Link to library)
Clone ID SLJ161
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12182-1
Original site URL
Representative seq. ID SLJ161P
(Link to Original site)
Representative DNA sequence 
>SLJ161 (SLJ161Q) /CSM/SL/SLJ1-C/SLJ161Q.Seq.d/
AACTTTGCAAATTAAACAAGTAAAAAAAAAAAAAAAAAAACAATAATAATAACTTATATA
AGAAAAGATCATAAAAAGTTTCAATAAAATTATAATATATAGCAATAAAGAAGAAAAAAG
AAAAAAAAAAAAAAAAAAAATAATAAAAGAAAAAAAAAAAAAAXXXXXXXXXXAAAAAGA
ACCAAAGAAACCAGAAGATATTCATCCTGATGCTATCGAGTATACTAAGAAAACCCTTCA
TTGTGCATGGCATCCAAAAGATAATCTCATTGCTGTTGGTGCCGCTAATACCGTGTATTT
ATATGCTGCTACTGAAAATAAATAAAAATAATAATTATATTAATAATAAAATAATAATAA
ATAATAATAATTAATAATAATAATAAAAATAATCATAATAACAACTCATAATCACTACAA
CCATCATTCAAGTTCAAAAAAAATAATATTAAAAAAAAA
sequence update 1999. 3. 5
Translated Amino Acid sequence 
tlqikqvkkkkkkq***li*EKIIKSFNKIIIYSNKEEKRKKKKKKIIKEKKKK---

---KKNQRNQKIFILMLSSILRKPFIVHGIQKIISLLLVPLIPCIYMLLLKINKNNNYIN
NKIIINNNN*****k*s**qliitttiiqvqkk*y*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
nfan*tskkkkkktiiityirkdhkkfq*nyni*q*rrkkkkkkkknnkrkkkk---

---KKNQRNQKIFILMLSSILRKPFIVHGIQKIISLLLVPLIPCIYMLLLKINKNNNYIN
NKIIINNNN*****k*s**qliitttiiqvqkk*y*kk

Frame B:
tlqikqvkkkkkkq***li*EKIIKSFNKIIIYSNKEEKRKKKKKKIIKEKKKK---

---krtketrryss*cyrvy*enpslcmaskr*shccwcr*yrvficcy*k*ikiiiili
ik***iiiinnnnknnhnnns*slqpsfkfkknnikkk

Frame C:
lcklnk*kkkkknnnnnlykkrs*kvsikl*yiaikkkkekkkkkk**kkkkk---

---kepkkpedihpdaieytkktlhcawhpkdnliavgaantvylyaatenk*k**ly**
*nnnk***liiiikiiiitthnhynhhssskkiilkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH625 (VSH625Q) /CSM/VS/VSH6-B/VSH625Q.Seq.d/                        280   2e-74
VSB233 (VSB233Q) /CSM/VS/VSB2-B/VSB233Q.Seq.d/                        280   2e-74
SLJ161 (SLJ161Q) /CSM/SL/SLJ1-C/SLJ161Q.Seq.d/                        280   2e-74
SSH578 (SSH578Q) /CSM/SS/SSH5-D/SSH578Q.Seq.d/                         42   0.007
VFC573 (VFC573Q) /CSM/VF/VFC5-D/VFC573Q.Seq.d/                         34   1.8
SFK370 (SFK370Q) /CSM/SF/SFK3-C/SFK370Q.Seq.d/                         34   1.8
SFH895 (SFH895Q) /CSM/SF/SFH8-D/SFH895Q.Seq.d/                         34   1.8
AFL383 (AFL383Q) /CSM/AF/AFL3-D/AFL383Q.Seq.d/                         34   1.8
AFE163 (AFE163Q) /CSM/AF/AFE1-C/AFE163Q.Seq.d/                         34   1.8
VSJ659 (VSJ659Q) /CSM/VS/VSJ6-C/VSJ659Q.Seq.d/                         32   7.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF167979|AF167979.1 Dictyostelium discoideum protein phosphatase 2A B55 regulatory subunit (pppD) mRNA, complete cds.   280  4e-84  2
AF138279|AF138279.1 Dictyostelium discoideum protein phosphatase 2A 55 kDa regulatory B subunit mRNA, partial cds.   280  1e-71  1
AF174643|AF174643.1 Caenorhabditis elegans PP2A-B regulatory subunit PR55/B (sur-6) mRNA, complete cds.    40  0.79  2
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    38  7.5  5
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF167979_1(AF167979|pid:none) Dictyostelium discoideum protein p...   108   6e-23
AF138279_1(AF138279|pid:none) Dictyostelium discoideum protein p...   108   6e-23
BC075402_1(BC075402|pid:none) Xenopus tropicalis protein phospha...    53   4e-06
BC066723_1(BC066723|pid:none) Danio rerio zgc:76887, mRNA (cDNA ...    52   5e-06
AB172982_1(AB172982|pid:none) Macaca fascicularis brain cDNA clo...    52   6e-06
U09354_1(U09354|pid:none) Oryctolagus cuniculus protein phosphat...    52   6e-06
AK093115_1(AK093115|pid:none) Homo sapiens cDNA FLJ35796 fis, cl...    52   6e-06
(Q8BG02) RecName: Full=Serine/threonine-protein phosphatase 2A 5...    52   6e-06
AF145027_1(AF145027|pid:none) Homo sapiens protein phosphatase 2...    52   6e-06
CS121977_1(CS121977|pid:none) Sequence 56 from Patent WO20050591...    52   6e-06
protein update 2009. 6. 6
PSORT 

 psg: 0.62  gvh: 0.39  alm: 0.20  top: 0.50  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.87  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SLJ161 is nuc
5' end seq. ID SLJ161F
5' end seq. 
>SLJ161F.Seq
AACTTTGCAAATTAAACAAGTAAAAAAAAAAAAAAAAAAACAATAATAATAACTTATATA
AGAAAAGATCATAAAAAGTTTCAATAAAATTATAATATATAGCAATAAAGAAGAAAAAAG
AAAAAAAAAAAAAAAAAAAATAATAAAAGAAAAAAAAAAAAAA----------
Length of 5' end seq. 163
3' end seq. ID SLJ161Z
3' end seq. 
>SLJ161Z.Seq
----------AAAAAGAACCAAAGAAACCAGAAGATATTCATCCTGATGCTATCGAGTAT
ACTAAGAAAACCCTTCATTGTGCATGGCATCCAAAAGATAATCTCATTGCTGTTGGTGCC
GCTAATACCGTGTATTTATATGCTGCTACTGAAAATAAATAAAAATAATAATTATATTAA
TAATAAAATAATAATAAATAATAATAATTAATAATAATAATAAAAATAATCATAATAACA
ACTCATAATCACTACAACCATCATTCAAGTTCAAAAAAAATAATATTAAAAAAAAA
Length of 3' end seq. 286
Connected seq. ID SLJ161P
Connected seq. 
>SLJ161P.Seq
AACTTTGCAAATTAAACAAGTAAAAAAAAAAAAAAAAAAACAATAATAATAACTTATATA
AGAAAAGATCATAAAAAGTTTCAATAAAATTATAATATATAGCAATAAAGAAGAAAAAAG
AAAAAAAAAAAAAAAAAAAATAATAAAAGAAAAAAAAAAAAAA----------AAAAAGA
ACCAAAGAAACCAGAAGATATTCATCCTGATGCTATCGAGTATACTAAGAAAACCCTTCA
TTGTGCATGGCATCCAAAAGATAATCTCATTGCTGTTGGTGCCGCTAATACCGTGTATTT
ATATGCTGCTACTGAAAATAAATAAAAATAATAATTATATTAATAATAAAATAATAATAA
ATAATAATAATTAATAATAATAATAAAAATAATCATAATAACAACTCATAATCACTACAA
CCATCATTCAAGTTCAAAAAAAATAATATTAAAAAAAAA
Length of connected seq. 449
Full length Seq ID -
Full length Seq. -
Length of full length seq. -