SLJ159
Library SL
(Link to library)
Clone ID SLJ159
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID SLJ159Z
(Link to Original site)
Representative DNA sequence
>SLJ159 (SLJ159Q) /CSM/SL/SLJ1-C/SLJ159Q.Seq.d/
XXXXXXXXXXAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCAT
CAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGC
TCGTTTATGTAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATC
AAACTTGTAAATCAATATATTAAAAATAATAAAAAAATAAAAAAATAAAAAAAAATAAAA
AATTAAATCTCAATCTTTTTTTAATTATAAAAAAAAATAAAAAAGAAAAAAATT
sequence update 1998.10.22
Translated Amino Acid sequence
---SRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSN
L*inilkiikk*knkkk*kiksqsffnykkk*krkk


Translated Amino Acid sequence (All Frames)
Frame A:
---nlvssli*svtcpvspskkfkfvpfqtftrltki*vlvyvrvlvlmlmmssnslldq
tcksiy*k**knkkikknkklnlnlfliikknkkekn


Frame B:
---isfrl*fsrshvrchhqrnssscrfkllqg*qrfrcsfm*gswy*c**chqirc*ik
lvnqyiknnkkikk*kkikn*isiff*l*kkikkkki


Frame C:
---SRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSN
L*inilkiikk*knkkk*kiksqsffnykkk*krkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE313 (VSE313Q) /CSM/VS/VSE3-A/VSE313Q.Seq.d/ 377 e-104
VSD165 (VSD165Q) /CSM/VS/VSD1-C/VSD165Q.Seq.d/ 377 e-104
VFA796 (VFA796Q) /CSM/VF/VFA7-D/VFA796Q.Seq.d/ 377 e-104
SLK325 (SLK325Q) /CSM/SL/SLK3-B/SLK325Q.Seq.d/ 377 e-104
SLJ159 (SLJ159Q) /CSM/SL/SLJ1-C/SLJ159Q.Seq.d/ 377 e-104
SLI203 (SLI203Q) /CSM/SL/SLI2-A/SLI203Q.Seq.d/ 377 e-104
SLH603 (SLH603Q) /CSM/SL/SLH6-A/SLH603Q.Seq.d/ 377 e-104
SLG446 (SLG446Q) /CSM/SL/SLG4-B/SLG446Q.Seq.d/ 377 e-104
SLE879 (SLE879Q) /CSM/SL/SLE8-D/SLE879Q.Seq.d/ 377 e-104
SLC531 (SLC531Q) /CSM/SL/SLC5-B/SLC531Q.Seq.d/ 377 e-104

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 377 e-101 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 377 e-101 1
AE004163|AE004163.1 Vibrio cholerae chromosome I, section 71 of 251 of the complete chromosome. 44 0.91 1
BX537113|BX537113.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-207G17. 40 14 1
AC113984|AC113984.3 Mus musculus clone RP24-97D3, WORKING DRAFT SEQUENCE, 13 ordered pieces. 40 14 1
AC136987|AC136987.2 Mus musculus clone RP24-129J16, WORKING DRAFT SEQUENCE, 7 unordered pieces. 40 14 1
AC118668|AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence. 40 14 1
BW234669|BW234669.1 Ciona intestinalis cDNA, clone:citb048f20, 5' end, single read. 40 14 1
AL394791|AL394791.1 T3 end of clone AR0AA019E05 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 40 14 1
BZ068275|BZ068275.1 lkh85g12.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 40 14 1
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 114 1e-24
AE003852_1561(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 52 5e-06
CP001485_1754(CP001485|pid:none) Vibrio cholerae MJ-1236 chromos... 52 5e-06
CP001233_1501(CP001233|pid:none) Vibrio cholerae M66-2 chromosom... 52 5e-06
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 52 6e-06
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 52 6e-06
C82183(C82183)catalase VC1585 [imported] - Vibrio cholerae (stra... 52 6e-06
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 49 4e-05
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 48 9e-05
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 45 8e-04
protein update 2009. 6. 6
PSORT

psg: 0.87 gvh: 0.30 alm: 0.47 top: 0.50 tms: 0.00 mit: 0.38 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: cytoskeletal
16.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for SLJ159 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ159Z
3' end seq.
>SLJ159Z.Seq
----------AAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCAT
CAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGC
TCGTTTATGTAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATC
AAACTTGTAAATCAATATATTAAAAATAATAAAAAAATAAAAAAATAAAAAAAAATAAAA
AATTAAATCTCAATCTTTTTTTAATTATAAAAAAAAATAAAAAAGAAAAAAATT
Length of 3' end seq. 284
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -