>SLJ149 (SLJ149Q) /CSM/SL/SLJ1-C/SLJ149Q.Seq.d/
XXXXXXXXXXTTGGATGCAAAAGATCCATCTGCTCATGTTTACATTGCAATGGCAAAATT
ATTTGCTTGTGATGAATGTTTCAAAGTTACCGATGATTCACTTCAATTATTTGGTGGTTA
TGGTTATCTTAAAGATTATCCAGTTGAAAGATATTTACGTGATCTTCGTGTTCATCGTAT
TTTGGAAGGTTCTGATGCTGTTATGAGATTAATCATTTCAAGAGAATTAAGTAAAGATGA
TCATTAAAAAAAAAAAAAAAAAAAAAAAATAATAAAATAAAATAAAAAAA

---DAKDPSAHVYIAMAKLFACDECFKVTDDSLQLFGGYGYLKDYPVERYLRDLRVHRIL
EGSDAVMRLIISRELSKDDH*kkkkkkkiik*nkk

Frame A:
---wmqkihllmftlqwqnyllvmnvsklpmihfnylvvmvilkiiqlkdiyvifvfivf
wkvlmll*d*sfqen*vkmiikkkkkkkk**nkikk


Frame B:
---gckrsicsclhcngkiicl**mfqsyr*ftsiiwwlwls*rlss*kift*sscssyf
grf*ccyeinhfkrik*r*slkkkkkkknnkik*k


Frame C:
---DAKDPSAHVYIAMAKLFACDECFKVTDDSLQLFGGYGYLKDYPVERYLRDLRVHRIL
EGSDAVMRLIISRELSKDDH*kkkkkkkiik*nkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH808 (SSH808Q) /CSM/SS/SSH8-A/SSH808Q.Seq.d/                        466   e-131
SLJ730 (SLJ730Q) /CSM/SL/SLJ7-B/SLJ730Q.Seq.d/                        466   e-131
SLJ149 (SLJ149Q) /CSM/SL/SLJ1-C/SLJ149Q.Seq.d/                        466   e-131
SLI787 (SLI787Q) /CSM/SL/SLI7-D/SLI787Q.Seq.d/                        466   e-131
SFB677 (SFB677Q) /CSM/SF/SFB6-D/SFB677Q.Seq.d/                        450   e-126
VFC645 (VFC645Q) /CSM/VF/VFC6-B/VFC645Q.Seq.d/                        448   e-125
CHD513 (CHD513Q) /CSM/CH/CHD5-A/CHD513Q.Seq.d/                        442   e-123
VFM512 (VFM512Q) /CSM/VF/VFM5-A/VFM512Q.Seq.d/                        434   e-121
VFB804 (VFB804Q) /CSM/VF/VFB8-A/VFB804Q.Seq.d/                        434   e-121
SFG829 (SFG829Q) /CSM/SF/SFG8-B/SFG829Q.Seq.d/                        434   e-121

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE007768|AE007768.1 Clostridium acetobutylicum ATCC824 section 256 of 356 of the complete genome.    48  0.057  1
U17110|U17110.1 Clostridium acetobutylicum crotonase (crt), putative butyryl-CoA dehydrogenase (BCD), putative a-subunit of electron-transfer flavoprotein (etfA), putative b-subunit of electron-transfer flavoprotein (etfB), and 3-hydroxybutyryl-CoA dehydrogenase (hbd) genes, complete cds.    48  0.057  1
AC092625|AC092625.2 Homo sapiens chromosome 2 clone RP11-266L10, complete sequence.    34  0.18  4
AC113158|AC113158.2 Mus musculus chromosome UNK clone RP23-101D11, WORKING DRAFT SEQUENCE, 63 unordered pieces.    44  0.31  3
AP004603|AP004603.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 11/13.    50  0.82  4
CB075142|CB075142.1 hx15g08.b1 Gingko megasporophyll (NYBG) Gingko biloba cDNA clone hx15g08, mRNA sequence.    44  0.89  1
AC111770|AC111770.4 Rattus norvegicus clone CH230-170J3, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40  2.0  3
AC103202|AC103202.5 Rattus norvegicus clone CH230-35E14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40  2.1  3
Z92974|Z92974.1 T.thermosaccharolyticum BCS operon DNA.           36  3.4  2
AC099252|AC099252.6 Rattus norvegicus clone CH230-26G6, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42  3.5  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54IM8) RecName: Full=Isobutyryl-CoA dehydrogenase, mitochondri...   161   6e-39
CU459003_1469(CU459003|pid:none) Magnetospirillum gryphiswaldens...   101   9e-21
CR378678_209(CR378678|pid:none) Photobacterium profundum SS9 chr...   100   3e-20
BA000038_1041(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, ch...    99   3e-20
AE016796_463(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso...    99   3e-20
AC006632_9(AC006632|pid:none) Caenorhabditis elegans cosmid F28A...    99   6e-20
AP007255_3586(AP007255|pid:none) Magnetospirillum magneticum AMB...    98   8e-20
CP000613_1308(CP000613|pid:none) Rhodospirillum centenum SW, com...    98   1e-19
CP000851_2772(CP000851|pid:none) Shewanella pealeana ATCC 700345...    97   2e-19
CP000462_2028(CP000462|pid:none) Aeromonas hydrophila subsp. hyd...    97   2e-19

 psg: 0.75  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLJ149 is cyt

>SLJ149Z.Seq
----------TTGGATGCAAAAGATCCATCTGCTCATGTTTACATTGCAATGGCAAAATT
ATTTGCTTGTGATGAATGTTTCAAAGTTACCGATGATTCACTTCAATTATTTGGTGGTTA
TGGTTATCTTAAAGATTATCCAGTTGAAAGATATTTACGTGATCTTCGTGTTCATCGTAT
TTTGGAAGGTTCTGATGCTGTTATGAGATTAATCATTTCAAGAGAATTAAGTAAAGATGA
TCATTAAAAAAAAAAAAAAAAAAAAAAAATAATAAAATAAAATAAAAAAA