SLJ143
Library SL
(Link to library)
Clone ID SLJ143
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16605-1
Original site URL
Representative seq. ID SLJ143P
(Link to Original site)
Representative DNA sequence
>SLJ143 (SLJ143Q) /CSM/SL/SLJ1-B/SLJ143Q.Seq.d/
AAAAATGAGAGTTTTATCATTCCTTTGTTTATTATTAGTTAGCTACGCTTCTGCTAAACA
ACAATTCTCTGAATTACAATACAGAAATGCTTTCACCAACTGGATGCAAGCTCACCAAAG
AACTTATTCCTCTGAAGAATTTAATGCTCGTTATCAAATCTTCAAATCCAATATGGATTA
TGTACACCAATGGAATTCAAAAGGTGGTGAAACCGTTTTGGGTTTAAATGTTTTCGCTGA
TATTXXXXXXXXXXTCGCAACAATGGCTTCTTTCCCAACTGCCTCATCAAATTAAAATTT
TATTTTTAATTGTCCGACTAACATTAATTTGATTTGTAATAAATAAAAAAAATAAAAATA
AAAAATAAAAT
sequence update 1999. 3. 5
Translated Amino Acid sequence
KMRVLSFLCLLLVSYASAKQQFSELQYRNAFTNWMQAHQRTYSSEEFNARYQIFKSNMDY
VHQWNSKGGETVLGLNVFADI---

---SQQWLLSQLPHQIKILFLIVRLTLI*fvinkknknkk*n


Translated Amino Acid sequence (All Frames)
Frame A:
knesfiiplfiis*lrfc*ttil*itiqkcfhqldasspknlfl*ri*cslsnlqiqygl
ctpmefkrw*nrfgfkcfr*y---

---SQQWLLSQLPHQIKILFLIVRLTLI*fvinkknknkk*n

Frame B:
KMRVLSFLCLLLVSYASAKQQFSELQYRNAFTNWMQAHQRTYSSEEFNARYQIFKSNMDY
VHQWNSKGGETVLGLNVFADI---

---rnngffpncliklkfyf*lsd*h*fdl**ikkikiknk

Frame C:
k*efyhsfvyy*latlllnnnslnyntemlsptgckltkeliplknlmlvikssnpiwim
ytngiqkvvkpfwv*mfsli---

---atmasfptassn*nfifncptninlicnk*kk*k*kik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHH790 (VHH790Q) /CSM/VH/VHH7-D/VHH790Q.Seq.d/ 484 e-136
VFO828 (VFO828Q) /CSM/VF/VFO8-B/VFO828Q.Seq.d/ 484 e-136
VFO718 (VFO718Q) /CSM/VF/VFO7-A/VFO718Q.Seq.d/ 484 e-136
VFO623 (VFO623Q) /CSM/VF/VFO6-A/VFO623Q.Seq.d/ 484 e-136
VFO439 (VFO439Q) /CSM/VF/VFO4-B/VFO439Q.Seq.d/ 484 e-136
VFO416 (VFO416Q) /CSM/VF/VFO4-A/VFO416Q.Seq.d/ 484 e-136
VFO346 (VFO346Q) /CSM/VF/VFO3-B/VFO346Q.Seq.d/ 484 e-136
VFO306 (VFO306Q) /CSM/VF/VFO3-A/VFO306Q.Seq.d/ 484 e-136
VFO131 (VFO131Q) /CSM/VF/VFO1-B/VFO131Q.Seq.d/ 484 e-136
VFN670 (VFN670Q) /CSM/VF/VFN6-C/VFN670Q.Seq.d/ 484 e-136

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 484 e-170 3
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds. 107 9e-36 2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds. 94 1e-34 2
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 96 2e-32 5
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds. 92 3e-26 2
AL034548|AL034548.25 Human DNA sequence from clone RP5-1103G7 on chromosome 20p12.2-13. Contains up to five unknown novel genes, the gene for a novel protein kinase domains containing protein similar to phosphoprotein C8FW an the SOX22 gene for SRY (sex-determining region Y)-box 22. Contains five putative CpG islands, ESTs, STSs and GSSs. 48 0.031 2
AC101343|AC101343.1 Mus musculus clone RP23-110M19, LOW-PASS SEQUENCE SAMPLING. 38 0.17 2
AX345439|AX345439.1 Sequence 510 from Patent WO0200928. 46 0.29 1
AC145165|AC145165.4 Medicago truncatula clone mth2-4j24, WORKING DRAFT SEQUENCE, 3 unordered pieces. 46 0.29 1
AZ945988|AZ945988.1 2M0207N05R Mouse 10kb plasmid UUGC2M library Mus musculus genomic clone UUGC2M0207N05 R, DNA sequence. 46 0.29 1
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot... 166 2e-40
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 135 3e-31
(Q94503) RecName: Full=Cysteine proteinase 6; EC=3.4.22... 134 7e-31
(Q94504) RecName: Full=Cysteine proteinase 7; EC=3.4.22... 134 1e-30
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 133 2e-30
AC117076_20(AC117076|pid:none) Dictyostelium discoideum chromoso... 91 9e-18
(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 91 9e-18
X03930_1(X03930|pid:none) Dictyostelium discoideum 3'gene fragme... 58 1e-07
AK226753_1(AK226753|pid:none) Arabidopsis thaliana mRNA for papa... 55 6e-07
AC000132_24(AC000132|pid:none) Sequence of BAC F21M12 from Arabi... 55 6e-07
protein update 2009. 6. 6
PSORT

psg: 0.96 gvh: 0.87 alm: 0.36 top: 0.40 tms: 0.00 mit: 0.32 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
16.0 %: vacuolar
8.0 %: mitochondrial
8.0 %: endoplasmic reticulum
4.0 %: Golgi

>> prediction for SLJ143 is exc

5' end seq. ID SLJ143F
5' end seq.
>SLJ143F.Seq
AAAAATGAGAGTTTTATCATTCCTTTGTTTATTATTAGTTAGCTACGCTTCTGCTAAACA
ACAATTCTCTGAATTACAATACAGAAATGCTTTCACCAACTGGATGCAAGCTCACCAAAG
AACTTATTCCTCTGAAGAATTTAATGCTCGTTATCAAATCTTCAAATCCAATATGGATTA
TGTACACCAATGGAATTCAAAAGGTGGTGAAACCGTTTTGGGTTTAAATGTTTTCGCTGA
TATT----------
Length of 5' end seq. 244
3' end seq. ID SLJ143Z
3' end seq.
>SLJ143Z.Seq
----------TCGCAACAATGGCTTCTTTCCCAACTGCCTCATCAAATTAAAATTTTATT
TTTAATTGTCCGACTAACATTAATTTGATTTGTAATAAATAAAAAAAATAAAAATAAAAA
ATAAAAT
Length of 3' end seq. 117
Connected seq. ID SLJ143P
Connected seq.
>SLJ143P.Seq
AAAAATGAGAGTTTTATCATTCCTTTGTTTATTATTAGTTAGCTACGCTTCTGCTAAACA
ACAATTCTCTGAATTACAATACAGAAATGCTTTCACCAACTGGATGCAAGCTCACCAAAG
AACTTATTCCTCTGAAGAATTTAATGCTCGTTATCAAATCTTCAAATCCAATATGGATTA
TGTACACCAATGGAATTCAAAAGGTGGTGAAACCGTTTTGGGTTTAAATGTTTTCGCTGA
TATT----------TCGCAACAATGGCTTCTTTCCCAACTGCCTCATCAAATTAAAATTT
TATTTTTAATTGTCCGACTAACATTAATTTGATTTGTAATAAATAAAAAAAATAAAAATA
AAAAATAAAAT
Length of connected seq. 361
Full length Seq ID -
Full length Seq. -
Length of full length seq. -