SLJ132
Library SL
(Link to library)
Clone ID SLJ132
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13856-1
Original site URL
Representative seq. ID SLJ132P
(Link to Original site)
Representative DNA sequence
>SLJ132 (SLJ132Q) /CSM/SL/SLJ1-B/SLJ132Q.Seq.d/
CACAACCACCACAGCAGGTTGTGAATCTGATTCATTCCCAGATTCATCAGATGGTCCATC
TTATACATCTGGTTCTTCTGGTTCATCAGGTACTTACATTTGGAATGGTAAAGGTGTTAA
AATTGATATCTTTTAAAATTAAACACCCATATATATGTTTCXXXXXXXXXXCACAACCAC
CACAGCAGGTTCACAATCTGATTCATTCCCAGATTCATCAGATGGTCCATCTTATACATC
TGGTTCTTCTGGTTCATCAGGTACTTACATTTGGAATGGTAAAGGTGTTAAAATTGATAT
CTTTTAAAATTAAACACCCATATATATGTTTCAAAA
sequence update 1999. 3. 5
Translated Amino Acid sequence
QPPQQVVNLIHSQIHQMVHLIHLVLLVHQVLTFGMVKVLKLISFKIKHPYICF---

---QPPQQVHNLIHSQIHQMVHLIHLVLLVHQVLTFGMVKVLKLISFKIKHPYICFK


Translated Amino Acid sequence (All Frames)
Frame A:
hnhhsrl*i*fiprfirwsilyiwffwfirylhlew*rc*n*yllklnthiyv---

---hnhhsrfti*fiprfirwsilyiwffwfirylhlew*rc*n*yllklnthiyvsk

Frame B:
ttttagcesdsfpdssdgpsytsgssgssgtyiwngkgvkidif*n*tpiymf---

---ttttagsqsdsfpdssdgpsytsgssgssgtyiwngkgvkidif*n*tpiymfq

Frame C:
QPPQQVVNLIHSQIHQMVHLIHLVLLVHQVLTFGMVKVLKLISFKIKHPYICF---

---QPPQQVHNLIHSQIHQMVHLIHLVLLVHQVLTFGMVKVLKLISFKIKHPYICFK

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLJ132 (SLJ132Q) /CSM/SL/SLJ1-B/SLJ132Q.Seq.d/ 607 e-173
SSI136 (SSI136Q) /CSM/SS/SSI1-B/SSI136Q.Seq.d/ 327 6e-89
SSF591 (SSF591Q) /CSM/SS/SSF5-D/SSF591Q.Seq.d/ 327 6e-89
SSB896 (SSB896Q) /CSM/SS/SSB8-D/SSB896Q.Seq.d/ 327 6e-89
SLF703 (SLF703Q) /CSM/SL/SLF7-A/SLF703Q.Seq.d/ 327 6e-89
SLB578 (SLB578Q) /CSM/SL/SLB5-D/SLB578Q.Seq.d/ 323 1e-87
SLB340 (SLB340Q) /CSM/SL/SLB3-B/SLB340Q.Seq.d/ 323 1e-87
SLA355 (SLA355Q) /CSM/SL/SLA3-C/SLA355Q.Seq.d/ 323 1e-87
SLC829 (SLC829Q) /CSM/SL/SLC8-B/SLC829Q.Seq.d/ 305 2e-82
VFG156 (VFG156Q) /CSM/VF/VFG1-C/VFG156Q.Seq.d/ 276 2e-73

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC138133|AC138133.5 Medicago truncatula clone mth2-9o2, WORKING DRAFT SEQUENCE, 11 unordered pieces. 42 0.002 2
AE010573|AE010573.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 115 of 197 of the complete genome. 42 0.008 2
AY079536|AY079536.1 AY079536 Scripps Pier (La Jolla, CA) uncultured virus community uncultured marine virus genomic clone SIO51p10A4L, DNA sequence. 38 0.036 3
BE029730|BE029730.1 kp34b01.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to contains element PTR7 repetitive element ;, mRNA sequence. 34 0.040 2
BE581018|BE581018.1 kp84b12.y2 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to contains element PTR7 repetitive element ;, mRNA sequence. 34 0.050 2
BE029819|BE029819.1 kp35c09.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to contains element PTR7 repetitive element ;, mRNA sequence. 34 0.052 2
BE580469|BE580469.1 kp77g08.y2 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to contains element PTR7 repetitive element ;, mRNA sequence. 34 0.053 2
BE223115|BE223115.1 kp73a03.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to contains element PTR7 repetitive element ;, mRNA sequence. 34 0.055 2
BE223180|BE223180.1 kp73f12.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to contains element PTR7 repetitive element ;, mRNA sequence. 34 0.064 2
AW496615|AW496615.1 kp03e11.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to contains element PTR7 repetitive element ;, mRNA sequence. 34 0.067 2
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY935926_1(AY935926|pid:none) Brunellia sp. Skinner et al. 43 ma... 32 5.2
H71606(H71606)hypothetical protein PFB0755w - malaria parasite (... 32 5.2
DQ663628_1(DQ663628|pid:none) Euscaphis japonica maturase K (mat... 32 5.2
AE014186_182(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 32 6.8
AE014299_902(AE014299|pid:none) Shewanella oneidensis MR-1, comp... 32 6.8
AY935938_1(AY935938|pid:none) Sloanea australis isolate 44 matur... 32 6.8
AY724338_1(AY724338|pid:none) Ungnadia speciosa maturase K (matK... 32 8.9

protein update 2009. 6. 6
PSORT

psg: 0.93 gvh: 0.75 alm: 0.29 top: 0.50 tms: 0.07 mit: 0.41 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.28 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
32.0 %: extracellular, including cell wall
20.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for SLJ132 is pla

5' end seq. ID SLJ132F
5' end seq.
>SLJ132F.Seq
CACAACCACCACAGCAGGTTGTGAATCTGATTCATTCCCAGATTCATCAGATGGTCCATC
TTATACATCTGGTTCTTCTGGTTCATCAGGTACTTACATTTGGAATGGTAAAGGTGTTAA
AATTGATATCTTTTAAAATTAAACACCCATATATATGTTTC----------
Length of 5' end seq. 161
3' end seq. ID SLJ132Z
3' end seq.
>SLJ132Z.Seq
----------CACAACCACCACAGCAGGTTCACAATCTGATTCATTCCCAGATTCATCAG
ATGGTCCATCTTATACATCTGGTTCTTCTGGTTCATCAGGTACTTACATTTGGAATGGTA
AAGGTGTTAAAATTGATATCTTTTAAAATTAAACACCCATATATATGTTTCAAAA
Length of 3' end seq. 165
Connected seq. ID SLJ132P
Connected seq.
>SLJ132P.Seq
CACAACCACCACAGCAGGTTGTGAATCTGATTCATTCCCAGATTCATCAGATGGTCCATC
TTATACATCTGGTTCTTCTGGTTCATCAGGTACTTACATTTGGAATGGTAAAGGTGTTAA
AATTGATATCTTTTAAAATTAAACACCCATATATATGTTTC----------CACAACCAC
CACAGCAGGTTCACAATCTGATTCATTCCCAGATTCATCAGATGGTCCATCTTATACATC
TGGTTCTTCTGGTTCATCAGGTACTTACATTTGGAATGGTAAAGGTGTTAAAATTGATAT
CTTTTAAAATTAAACACCCATATATATGTTTCAAAA
Length of connected seq. 326
Full length Seq ID -
Full length Seq. -
Length of full length seq. -