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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ123
Library SL
(Link to library)
Clone ID SLJ123
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16259-1
Original site URL
Representative seq. ID SLJ123F
(Link to Original site)
Representative DNA sequence 
>SLJ123 (SLJ123Q) /CSM/SL/SLJ1-A/SLJ123Q.Seq.d/
AAAAATTTTAATTGACTATGATTCAAAATATTCTTCAAACTCATCGTTACTTATTACTGT
CGGTGGTAATTCCCAAACTGCTGCTTATTATGTTACAATCCCTTCATATCCTCAAGCAAT
TGATAAATCTGTTTCTAAAGGAACTGGTGGTCTAATCACTATCTCTGGTAAATGCTTAAA
AGGATCTGGTCCATCTGTTACATCTGTTTTAGTAGGTGCATACACATGTGCTGTTXXXXX
XXXXX
sequence update 1999. 3. 5
Translated Amino Acid sequence 
KILIDYDSKYSSNSSLLITVGGNSQTAAYYVTIPSYPQAIDKSVSKGTGGLITISGKCLK
GSGPSVTSVLVGAYTCA---
Translated Amino Acid sequence (All Frames) 
Frame A:
knfn*l*fkiffklivtyycrw*fpnccllcynpfisssn**icf*rnwwsnhylw*mlk
riwsicyicfsrcihmcc---


Frame B:
KILIDYDSKYSSNSSLLITVGGNSQTAAYYVTIPSYPQAIDKSVSKGTGGLITISGKCLK
GSGPSVTSVLVGAYTCA---


Frame C:
kf*ltmiqnilqthrylllsvvipklllimlqslhilkqlinlflkelvv*slslvna*k
dlvhllhlf**vhthvl---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ123 (SLJ123Q) /CSM/SL/SLJ1-A/SLJ123Q.Seq.d/                        466   e-131
CFI250 (CFI250Q) /CSM/CF/CFI2-C/CFI250Q.Seq.d/                        466   e-131
AFO393 (AFO393Q) /CSM/AF/AFO3-D/AFO393Q.Seq.d/                        466   e-131
AFI888 (AFI888Q) /CSM/AF/AFI8-D/AFI888Q.Seq.d/                        466   e-131
AFA736 (AFA736Q) /CSM/AF/AFA7-B/AFA736Q.Seq.d/                        466   e-131
AFA285 (AFA285Q) /CSM/AF/AFA2-D/AFA285Q.Seq.d/                        466   e-131
CFF612 (CFF612Q) /CSM/CF/CFF6-A/CFF612Q.Seq.d/                        464   e-130
AFO606 (AFO606Q) /CSM/AF/AFO6-A/AFO606Q.Seq.d/                        408   e-113
AFL794 (AFL794Q) /CSM/AF/AFL7-D/AFL794Q.Seq.d/                        398   e-110
AHJ894 (AHJ894Q) /CSM/AH/AHJ8-D/AHJ894Q.Seq.d/                        359   1e-98
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ523512|BQ523512.1 NISC_nl22f05.y1 NICHD_XGC_Emb7 Silurana tropicalis cDNA clone IMAGE:5379585 5', mRNA sequence.    44  0.74  1
AL659461|AL659461.1 Xenopus tropicalis EST, clone TNeu045j10 5'.    44  0.74  1
AL354976|AL354976.11 Human DNA sequence from clone RP11-20I6 on chromosome 10.    36  1.9  4
BX004884|BX004884.9 Zebrafish DNA sequence from clone DKEY-6N6.    42  2.3  4
BX294129|BX294129.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-34H12.    38  2.6  2
BU284182|BU284182.1 603599342F1 CSEQCHN54 Gallus gallus cDNA clone ChEST571d12 5', mRNA sequence.    42  2.9  1
AC118797|AC118797.3 Rattus norvegicus clone CH230-24D16, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    42  2.9  1
BZ919807|BZ919807.1 CH240_66A18.TJ CHORI-240 Bos taurus genomic clone CH240_66A18, DNA sequence.    42  2.9  1
BU433269|BU433269.1 603221637F1 CSEQRBN10 Gallus gallus cDNA clone ChEST216j9 5', mRNA sequence.    42  2.9  1
AC105394|AC105394.3 Homo sapiens BAC clone RP11-383M19 from 4, complete sequence.    42  2.9  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...    36   0.37
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS...    36   0.37
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...    36   0.37
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...    36   0.37
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...    36   0.37
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...    36   0.37
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...    36   0.37
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS...    36   0.37
FJ374944_1(FJ374944|pid:none) Dictyostelium discoideum strain QS...    36   0.37
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...    36   0.37
protein update 2009. 6. 6
PSORT 

 psg: 0.91  gvh: 0.49  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLJ123 is cyt
5' end seq. ID SLJ123F
5' end seq. 
>SLJ123F.Seq
AAAAATTTTAATTGACTATGATTCAAAATATTCTTCAAACTCATCGTTACTTATTACTGT
CGGTGGTAATTCCCAAACTGCTGCTTATTATGTTACAATCCCTTCATATCCTCAAGCAAT
TGATAAATCTGTTTCTAAAGGAACTGGTGGTCTAATCACTATCTCTGGTAAATGCTTAAA
AGGATCTGGTCCATCTGTTACATCTGTTTTAGTAGGTGCATACACATGTGCTGTT-----
-----
Length of 5' end seq. 235
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -