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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLJ118
Library SL
(Link to library)
Clone ID SLJ118
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01419-1|Contig-U16297-1
Original site URL
Representative seq. ID SLJ118P
(Link to Original site)
Representative DNA sequence 
>SLJ118 (SLJ118Q) /CSM/SL/SLJ1-A/SLJ118Q.Seq.d/
CAAATTGCAGTAAACAACATTTCGTTACAGTTAAGGGAAATAATATTCAAAAGAACAAAC
AATACACAGCAACAGCAACAGCAGCAACAGCAACAACAGCAACAGCAGCAACAGCAACAA
CAGCAACAACAACATCCATCATTTTTCTCAACAAGAATGCATTTGGATCATTTCAATGGT
GXXXXXXXXXXANCCCNCCNTTTTTTTTTAAAATTTTACCCNANGTNNATTTNAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
sequence update 1999. 3. 5
Translated Amino Acid sequence 
QIAVNNISLQLREIIFKRTNNTQQQQQQQQQQQQQQQQQQQQQQHPSFFSTRMHLDHFNG
---

---XPPFFFKILPXVXXKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
QIAVNNISLQLREIIFKRTNNTQQQQQQQQQQQQQQQQQQQQQQHPSFFSTRMHLDHFNG
---

---XPPFFFKILPXVXXKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Frame B:
klq*ttfrys*gk*yskeqtihsnsnssnsnnsnssnsnnsnnnihhfsqqeciwiismv
---

---xxxfflkfypxxixkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk

Frame C:
ncskqhfvtvkgnniqknkqytatataatattataatattatttsiiflnknafgsfqw-
--

---pxxff*nftxxxfxkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI427 (VSI427Q) /CSM/VS/VSI4-B/VSI427Q.Seq.d/                        105   5e-22
VSH261 (VSH261Q) /CSM/VS/VSH2-C/VSH261Q.Seq.d/                        105   5e-22
VSD671 (VSD671Q) /CSM/VS/VSD6-C/VSD671Q.Seq.d/                        105   5e-22
VSB240 (VSB240Q) /CSM/VS/VSB2-B/VSB240Q.Seq.d/                        105   5e-22
VHP881 (VHP881Q) /CSM/VH/VHP8-D/VHP881Q.Seq.d/                        105   5e-22
VHI710 (VHI710Q) /CSM/VH/VHI7-A/VHI710Q.Seq.d/                        105   5e-22
SSM140 (SSM140Q) /CSM/SS/SSM1-B/SSM140Q.Seq.d/                        105   5e-22
SSL534 (SSL534Q) /CSM/SS/SSL5-B/SSL534Q.Seq.d/                        105   5e-22
SSK683 (SSK683Q) /CSM/SS/SSK6-D/SSK683Q.Seq.d/                        105   5e-22
SSK650 (SSK650Q) /CSM/SS/SSK6-C/SSK650Q.Seq.d/                        105   5e-22
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF045453|AF045453.1 Dictyostelium discoideum protein kinase YakA (yakA) mRNA, complete cds.    94  1e-15  1
BE733775|BE733775.1 601565746F1 NIH_MGC_21 Homo sapiens cDNA clone IMAGE:3840538 5', mRNA sequence.    46  0.29  1
AF458984|AF458984.1 Acinetobacter lwoffii restriction endonuclease (alw26IR) and m6 adenine and m5 cytosine DNA methyltransferase (alw26IM) genes, complete cds.    44  1.1  1
AC112366|AC112366.4 Rattus norvegicus clone CH230-113E13, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  4.5  1
AC107285|AC107285.4 Rattus norvegicus clone CH230-166C14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  4.5  1
AP001106|AP001106.4 Homo sapiens genomic DNA, chromosome 18q11.2 clone:RP11-770P7, WORKING DRAFT SEQUENCE, 26 unordered pieces.    40     18  1
AC090304|AC090304.1 Homo sapiens chromosome 18 clone RP11-811O6 map 18, LOW-PASS SEQUENCE SAMPLING.    40     18  1
BI426116|BI426116.1 saf07d03.y3 Gm-c1076 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1076-150 5' similar to TR:O49532 O49532 PREDICTED PROTEIN. ;, mRNA sequence.    40     18  1
AC001232|AC001232.2 Homo sapiens chromosome 11 clone pDJ148f1, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces.    40     18  1
AC106549|AC106549.3 Rattus norvegicus clone CH230-126G7, *** SEQUENCING IN PROGRESS ***, 34 unordered pieces.    40     18  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045453_1(AF045453|pid:none) Dictyostelium discoideum protein k...    42   0.009
(Q54QV3) RecName: Full=Probable serine/threonine-protein kinase ...    42   0.009
protein update 2009. 6. 6
PSORT 

 psg: 0.80  gvh: 0.26  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 4.68  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SLJ118 is nuc
5' end seq. ID SLJ118F
5' end seq. 
>SLJ118F.Seq
CAAATTGCAGTAAACAACATTTCGTTACAGTTAAGGGAAATAATATTCAAAAGAACAAAC
AATACACAGCAACAGCAACAGCAGCAACAGCAACAACAGCAACAGCAGCAACAGCAACAA
CAGCAACAACAACATCCATCATTTTTCTCAACAAGAATGCATTTGGATCATTTCAATGGT
G----------
Length of 5' end seq. 181
3' end seq. ID SLJ118Z
3' end seq. 
>SLJ118Z.Seq
----------ANCCCNCCNTTTTTTTTTAAAATTTTACCCNANGTNNATTTNAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 170
Connected seq. ID SLJ118P
Connected seq. 
>SLJ118P.Seq
CAAATTGCAGTAAACAACATTTCGTTACAGTTAAGGGAAATAATATTCAAAAGAACAAAC
AATACACAGCAACAGCAACAGCAGCAACAGCAACAACAGCAACAGCAGCAACAGCAACAA
CAGCAACAACAACATCCATCATTTTTCTCAACAAGAATGCATTTGGATCATTTCAATGGT
G----------ANCCCNCCNTTTTTTTTTAAAATTTTACCCNANGTNNATTTNAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
Length of connected seq. 351
Full length Seq ID -
Full length Seq. -
Length of full length seq. -