SLJ117
Library SL
(Link to library)
Clone ID SLJ117
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16513-1
Original site URL
Representative seq. ID SLJ117Z
(Link to Original site)
Representative DNA sequence
>SLJ117 (SLJ117Q) /CSM/SL/SLJ1-A/SLJ117Q.Seq.d/
XXXXXXXXXXGTCAAGAAAGCTCAAACCGTCGTTGATTCTCTCCCAGAAGAATTAAGAAC
TGAAGGTTCATACTACGTCAAAGTCATGAAAACCATTGCTGAAAAATCAATCGATTTTGT
AACCACTGAAATCGCTCGTATCACCAAATTAGTCTCTGGTTCAATGTCTGGAAAGAAAGC
TGATGAATTTGCCAAGAAACTCAATATTTTAGAATCTTTCAAATCAAAATAAATTAAATT
TAATTTAGAAAATAAAAAATAAAATAAAAGAAAAAAAATAAAATATAAAATAAAATTTTA
AAAATAAAAAA
sequence update 1998.10.22
Translated Amino Acid sequence
---KKAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKAD
EFAKKLNILESFKSK*ikfnlenkk*nkrkkikykikf*k*k


Translated Amino Acid sequence (All Frames)
Frame A:
---srklkpslilsqkn*elkvhttsks*kpllknqsil*plkslvspn*slvqclerkl
mnlprnsif*nlsnqnklnli*kiknkikekk*nik*nfknkk


Frame B:
---qessnrr*fsprrikn*rfilrqshenhc*kinrfcnh*nrsyhqislwfnvwkes*
*icqetqyfrifqikin*i*frk*kik*kkknki*nkilkik


Frame C:
---KKAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKAD
EFAKKLNILESFKSK*ikfnlenkk*nkrkkikykikf*k*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF163 (VSF163Q) /CSM/VS/VSF1-C/VSF163Q.Seq.d/ 426 e-119
VFO821 (VFO821Q) /CSM/VF/VFO8-A/VFO821Q.Seq.d/ 426 e-119
VFO618 (VFO618Q) /CSM/VF/VFO6-A/VFO618Q.Seq.d/ 426 e-119
VFO463 (VFO463Q) /CSM/VF/VFO4-C/VFO463Q.Seq.d/ 426 e-119
VFO241 (VFO241Q) /CSM/VF/VFO2-B/VFO241Q.Seq.d/ 426 e-119
VFN729 (VFN729Q) /CSM/VF/VFN7-B/VFN729Q.Seq.d/ 426 e-119
VFN359 (VFN359Q) /CSM/VF/VFN3-C/VFN359Q.Seq.d/ 426 e-119
VFN233 (VFN233Q) /CSM/VF/VFN2-B/VFN233Q.Seq.d/ 426 e-119
VFN206 (VFN206Q) /CSM/VF/VFN2-A/VFN206Q.Seq.d/ 426 e-119
VFM733 (VFM733Q) /CSM/VF/VFM7-B/VFM733Q.Seq.d/ 426 e-119

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 426 e-116 1
AF019112|AF019112.1 Dictyostelium discoideum protein disulfide isomerase (dis) mRNA, complete cds. 418 e-113 1
AI728718|AI728718.1 BNLGHi11417 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to FOLLICULAR VARIANT TRANSLOCATION PROTEIN, mRNA sequence. 42 0.099 2
AC130003|AC130003.3 Homo sapiens 3 BAC RP11-705F7 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 44 0.91 2
AL592446|AL592446.4 Human DNA sequence from clone RP11-291B6 on chromosome 1. 34 0.92 3
AC087794|AC087794.1 Caenorhabditis elegans cosmid Y32G9A, complete sequence. 44 0.96 1
AC135570|AC135570.2 Rattus norvegicus clone CH230-499E1, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 44 0.96 1
AX540651|AX540651.1 Sequence 7 from Patent WO0240688. 44 0.96 1
AB015476|AB015476.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MNC6. 44 0.96 1
AC006754|AC006754.1 Caenorhabditis elegans clone Y40B10, WORKING DRAFT SEQUENCE, 5 unordered pieces. 44 0.96 1
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86IA3) RecName: Full=Protein disulfide-isomerase 1; S... 137 9e-32
AF019112_1(AF019112|pid:none) Dictyostelium discoideum protein d... 135 4e-31
AY730725_1(AY730725|pid:none) Entamoeba histolytica protein disu... 56 3e-07
AE017341_67(AE017341|pid:none) Cryptococcus neoformans var. neof... 52 5e-06
(P57759) RecName: Full=Endoplasmic reticulum protein ERp29; Flag... 51 1e-05
EF086125_1(EF086125|pid:none) Picea sitchensis clone WS0285_I21 ... 48 1e-04
AY739288_1(AY739288|pid:none) Zea mays protein disulfide isomera... 45 6e-04
EU966127_1(EU966127|pid:none) Zea mays clone 291908 PDIL2-2 - Ze... 45 6e-04
AM485099_1(AM485099|pid:none) Vitis vinifera contig VV78X160692.... 45 6e-04
(P81623) RecName: Full=Endoplasmic reticulum protein ERp29; Flag... 45 6e-04
protein update 2009. 6. 6
PSORT

psg: 0.53 gvh: 0.43 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLJ117 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLJ117Z
3' end seq.
>SLJ117Z.Seq
----------GTCAAGAAAGCTCAAACCGTCGTTGATTCTCTCCCAGAAGAATTAAGAAC
TGAAGGTTCATACTACGTCAAAGTCATGAAAACCATTGCTGAAAAATCAATCGATTTTGT
AACCACTGAAATCGCTCGTATCACCAAATTAGTCTCTGGTTCAATGTCTGGAAAGAAAGC
TGATGAATTTGCCAAGAAACTCAATATTTTAGAATCTTTCAAATCAAAATAAATTAAATT
TAATTTAGAAAATAAAAAATAAAATAAAAGAAAAAAAATAAAATATAAAATAAAATTTTA
AAAATAAAAAA
Length of 3' end seq. 301
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -