>SLJ115 (SLJ115Q) /CSM/SL/SLJ1-A/SLJ115Q.Seq.d/
XXXXXXXXXXAGTCGTTAGTGAATCAAAAAAAGTTTTAGGTCAACTCACTCTTGGTAACT
TACTCTCACATATTGCCTCTAAAAAAGCTGTCCCAACTGATGCTGTCAGTAAAGTTATGT
TCCGTTTCACTAAAAATGAAAAATATATTCCAATCACTCAATCAACTTCTTTAGCTACTC
TTAGCAAATTTTTCGAAAATCATAGCAGTGCTATCGTAACTGAAAATGATGAAATCATTT
CAATTGTAACTAAAATTGATTTATTAACTTATTTAATGAAATCTCAACAAAAAAATTAAA
AATAAAATAAAAT

---VVSESKKVLGQLTLGNLLSHIASKKAVPTDAVSKVMFRFTKNEKYIPITQSTSLATL
SKFFENHSSAIVTENDEIISIVTKIDLLTYLMKSQQKN*k*nk

Frame A:
---VVSESKKVLGQLTLGNLLSHIASKKAVPTDAVSKVMFRFTKNEKYIPITQSTSLATL
SKFFENHSSAIVTENDEIISIVTKIDLLTYLMKSQQKN*k*nk


Frame B:
---slvnqkkf*vnsllvtyshilplkklsqlmlsvklcsvslkmknifqslnqll*lll
anfskiiavls*lkmmksfql*lkliy*li**nlnkkiknkik


Frame C:
---r**ikksfrsthsw*ltltycl*kscpn*ccq*syvpfh*k*kiysnhsinffsys*
qifrks*qcyrn*k**nhfncn*n*finlfneistkklkik*n

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE607 (VSE607Q) /CSM/VS/VSE6-A/VSE607Q.Seq.d/                        509   e-144
SLK501 (SLK501Q) /CSM/SL/SLK5-A/SLK501Q.Seq.d/                        509   e-144
SLJ115 (SLJ115Q) /CSM/SL/SLJ1-A/SLJ115Q.Seq.d/                        509   e-144
SLC737 (SLC737Q) /CSM/SL/SLC7-B/SLC737Q.Seq.d/                        509   e-144
CFJ587 (CFJ587Q) /CSM/CF/CFJ5-D/CFJ587Q.Seq.d/                        509   e-144
VHJ888 (VHJ888Q) /CSM/VH/VHJ8-D/VHJ888Q.Seq.d/                        486   e-136
VFH584 (VFH584Q) /CSM/VF/VFH5-D/VFH584Q.Seq.d/                        482   e-135
CFF550 (CFF550Q) /CSM/CF/CFF5-C/CFF550Q.Seq.d/                        472   e-132
VSJ807 (VSJ807Q) /CSM/VS/VSJ8-A/VSJ807Q.Seq.d/                        470   e-132
VFA511 (VFA511Q) /CSM/VF/VFA5-A/VFA511Q.Seq.d/                        470   e-132

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U27536|U27536.1 Dictyostelium discoideum cystathionine beta synthase mRNA, complete cds.   426  e-124  3
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    36  0.15  5
U55371|U55371.1 Caenorhabditis elegans cosmid T19F4.    38  0.17  2
AC144728|AC144728.4 Medicago truncatula clone mth2-6g7, WORKING DRAFT SEQUENCE, 2 unordered pieces.    32  0.18  7
AC105550|AC105550.4 Rattus norvegicus clone CH230-197M21, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    36  0.40  4
AC084866|AC084866.5 Homo sapiens BAC clone RP11-6E9 from 4, complete sequence.    46  0.56  3
AC096130|AC096130.6 Rattus norvegicus clone CH230-11C23, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    34  0.74  3
AC098375|AC098375.4 Rattus norvegicus clone CH230-2E3, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  0.97  1
AC094989|AC094989.5 Rattus norvegicus clone CH230-6E19, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  0.97  1
AL166577|AL166577.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone  194H22 of library G from Tetraodon nigroviridis.    44  0.97  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27536_1(U27536|pid:none) Dictyostelium discoideum cystathionine...   145   3e-34
EU595730_1(EU595730|pid:none) Emericella nidulans cystathionine ...    65   6e-10
CP000497_215(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    65   7e-10
AF422799_1(AF422799|pid:none) Magnaporthe grisea cystathionine b...    62   5e-09
CR380951_127(CR380951|pid:none) Candida glabrata strain CBS138 c...    62   8e-09
AM270101_16(AM270101|pid:none) Aspergillus niger contig An05c001...    58   9e-08
AF424661_1(AF424661|pid:none) Phytophthora infestans clone MY-10...    57   3e-07
AF367364_1(AF367364|pid:none) Pichia pastoris cystathionine beta...    56   3e-07
FN392320_1188(FN392320|pid:none) Pichia pastoris GS115 chromosom...    56   3e-07
CR382126_405(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    54   2e-06

 psg: 0.86  gvh: 0.46  alm: 0.42  top: 0.50  tms: 0.00  mit: 0.21  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial

>> prediction for SLJ115 is cyt

>SLJ115Z.Seq
----------AGTCGTTAGTGAATCAAAAAAAGTTTTAGGTCAACTCACTCTTGGTAACT
TACTCTCACATATTGCCTCTAAAAAAGCTGTCCCAACTGATGCTGTCAGTAAAGTTATGT
TCCGTTTCACTAAAAATGAAAAATATATTCCAATCACTCAATCAACTTCTTTAGCTACTC
TTAGCAAATTTTTCGAAAATCATAGCAGTGCTATCGTAACTGAAAATGATGAAATCATTT
CAATTGTAACTAAAATTGATTTATTAACTTATTTAATGAAATCTCAACAAAAAAATTAAA
AATAAAATAAAAT