>SLJ104 (SLJ104Q) /CSM/SL/SLJ1-A/SLJ104Q.Seq.d/
CTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTCACGGTAATCTC
GGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGTCATTCCCAAAG
GATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAGCTGGTATGACT
CACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAGAAATCGTTGAA
GCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTGGTTATGTTGAA
AXXXXXXXXXXAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATAC
CTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGG
CGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGAGAGTTAT
CAAACATAAA

LNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMT
HVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVE---

---KLVVLPSRKSLSNSSIPPASLVTVFIKPLKIRLNISASRNQDQLRLKFNKLDFRELS
NI

Frame A:
LNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMT
HVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVE---

---KLVVLPSRKSLSNSSIPPASLVTVFIKPLKIRLNISASRNQDQLRLKFNKLDFRELS
NI

Frame B:
*ttiti*vivnlklhvtvisvsdqereppdikvksshsqrmtvpkkst*lhswvtklv*l
tlsei*knqvqrctkkkslkpspslnvhqctllv*lvmlk---

---nwsccprenhsqihrylqqvwsrsssnr*r*d*ifrrqeikin*glnsin*isesyq
t*

Frame C:
kqq*qyess*i*sstsr*srfqtkkesrqtsr*sqvipkg*pypksplncihglqswyds
rcqrfrktrfkdaqkrnr*srhhh*mstnvhcwfswlc*---

---tgraalekitlkfidtsskfghglhqtaedktkyfgvkksrstka*iq*irfqrvik
hk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA485 (VHA485Q) /CSM/VH/VHA4-D/VHA485Q.Seq.d/                        597   e-170
VFO878 (VFO878Q) /CSM/VF/VFO8-D/VFO878Q.Seq.d/                        597   e-170
VFO869 (VFO869Q) /CSM/VF/VFO8-C/VFO869Q.Seq.d/                        597   e-170
VFO722 (VFO722Q) /CSM/VF/VFO7-A/VFO722Q.Seq.d/                        597   e-170
VFO705 (VFO705Q) /CSM/VF/VFO7-A/VFO705Q.Seq.d/                        597   e-170
VFO585 (VFO585Q) /CSM/VF/VFO5-D/VFO585Q.Seq.d/                        597   e-170
VFO546 (VFO546Q) /CSM/VF/VFO5-B/VFO546Q.Seq.d/                        597   e-170
VFO454 (VFO454Q) /CSM/VF/VFO4-C/VFO454Q.Seq.d/                        597   e-170
VFO366 (VFO366Q) /CSM/VF/VFO3-C/VFO366Q.Seq.d/                        597   e-170
VFO274 (VFO274Q) /CSM/VF/VFO2-D/VFO274Q.Seq.d/                        597   e-170

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds.   555  0.0  3
AX489150|AX489150.1 Sequence 6450 from Patent WO02053728.         42  2e-15  5
BI419178|BI419178.1 LjNEST29c8r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.    62  2e-11  2
AV429051|AV429051.1 Lotus japonicus cDNA clone:MWM118e09_r, 5' end.    62  2e-11  2
AV410149|AV410149.1 Lotus japonicus cDNA clone:MWL068f12_r, 5' end.    62  2e-11  2
AV413065|AV413065.1 Lotus japonicus cDNA clone:MWM227f10_r, 5' end.    62  2e-11  2
BG662092|BG662092.1 Ljirnpest38-108-g6 Ljirnp Lambda HybriZap two-hybrid library Lotus japonicus cDNA clone LP108-38-g6 5' similar to homolog of 60S ribosomal protein L3, mRNA sequence.    62  2e-11  2
BI419201|BI419201.1 LjNEST29f10r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.    62  2e-11  2
AV408402|AV408402.1 Lotus japonicus cDNA clone:MWL040g01_r, 5' end.    62  2e-11  2
AV408892|AV408892.1 Lotus japonicus cDNA clone:MWL048c02_r, 5' end.    62  2e-11  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   197   1e-49
AJ238851_1(AJ238851|pid:none) Bos taurus rpl3 gene for ribosomal...   159   2e-38
(P39872) RecName: Full=60S ribosomal protein L3;  &BC102253_1(BC...   159   2e-38
AK151084_1(AK151084|pid:none) Mus musculus bone marrow macrophag...   159   3e-38
AK151426_1(AK151426|pid:none) Mus musculus bone marrow macrophag...   159   3e-38
AK151142_1(AK151142|pid:none) Mus musculus bone marrow macrophag...   159   3e-38
AK151057_1(AK151057|pid:none) Mus musculus bone marrow macrophag...   159   3e-38
CR926481_1(CR926481|pid:none) Pongo abelii mRNA; cDNA DKFZp468G0...   159   4e-38
BC008492_1(BC008492|pid:none) Homo sapiens ribosomal protein L3,...   159   4e-38
(P39023) RecName: Full=60S ribosomal protein L3; AltName: Full=H...   159   4e-38

 psg: 0.52  gvh: 0.21  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.06
 nuc: 0.18  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SLJ104 is nuc

>SLJ104F.Seq
CTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTCACGGTAATCTC
GGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGTCATTCCCAAAG
GATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAGCTGGTATGACT
CACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAGAAATCGTTGAA
GCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTGGTTATGTTGAA
A----------

>SLJ104Z.Seq
----------AAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACC
TCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGGC
GTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGAGAGTTATC
AAACATAAA

>SLJ104P.Seq
CTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTCACGGTAATCTC
GGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGTCATTCCCAAAG
GATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAGCTGGTATGACT
CACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAGAAATCGTTGAA
GCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTGGTTATGTTGAA
A----------AAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATAC
CTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGG
CGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGAGAGTTAT
CAAACATAAA