SLI877
Library SL
(Link to library)
Clone ID SLI877
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10989-1
Original site URL
Representative seq. ID SLI877P
(Link to Original site)
Representative DNA sequence
>SLI877 (SLI877Q) /CSM/SL/SLI8-D/SLI877Q.Seq.d/
AAATGATAAATAAATTTTTAACAATTTTTTTAATATTTTCAATTGTAATAATTAAAGTTT
TATCACAATCATCAAATGAACAACCATTAAATGTAGTACCATATCCACAAGAAGTTACAA
TGATTGGTTGTAATATTCCATTATCAGTAGGATCAATATCAATTAAAAGTAATATTGAAT
CAACAATATTAAGTATTTCAATTTCAAGATATCAGAGTTTATTTTTCCCATTTGTTTCAA
ATAATGTTTTAAAAGATAGCTCTTCAAATATCGAGTTATCATTAATTATTGCAAGTGATG
ATGAAACACTTGAATTGGGTATTGATGAAAGTTACTTTTTATTXXXXXXXXXXCTACTTT
GGTTCAAACTTGGACAAATATTAATGATCTAAGAGATGTACTAGCCGCTGGTTATAAAAC
TATAACATCGTTCTTTTTCTATTTAGATAGACAATCACCAACTGGAAATCATTATCATTA
TGAATGGCAAGATACTTGGGAAGATTTCTATGCATCAGATCCAAGATTAAATATTACTTC
AAATGCTGAAAATATTTTAGGTGGTGAAGCTACTATGTTTGGTGAACAAGTTAGTACCGT
CAATTGGGATGCCAGAGTTTGGCCAAGAGCTATTGGTATCTCTGAAAGATTATGGTCTGC
TACTGAAATTAATAATATCACTCTTGCTCTCCCTCGTATTGGCCAATTCTCTTGTGATAT
GTCTCGTCGTGGTATTTCCTCTGGTCCATTATTCCCTGATTTTTGCTCATTACCTGATGA
TTTATCTTTTTCTTTTAAACCAGTTTATCAATTATCAAAAGATGAAATTAAATTAATTTT
AAAAAAAAAATAAAAATTCTTTTGTAAACTTTATAAATAAAATAAAAATATTATAAAACT
TTA
sequence update 1999. 2.23
Translated Amino Acid sequence
MINKFLTIFLIFSIVIIKVLSQSSNEQPLNVVPYPQEVTMIGCNIPLSVGSISIKSNIES
TILSISISRYQSLFFPFVSNNVLKDSSSNIELSLIIASDDETLELGIDESYFL---

---TLVQTWTNINDLRDVLAAGYKTITSFFFYLDRQSPTGNHYHYEWQDTWEDFYASDPR
LNITSNAENILGGEATMFGEQVSTVNWDARVWPRAIGISERLWSATEINNITLALPRIGQ
FSCDMSRRGISSGPLFPDFCSLPDDLSFSFKPVYQLSKDEIKLILKKK*kffcklyk*nk
niikl


Translated Amino Acid sequence (All Frames)
Frame A:
k**inf*qff*yfql**lkfyhnhqmnnh*m*yhihkklq*lvvifhyq*dqyqlkviln
qqy*vfqfqdirvyfshlfqimf*kialqissyh*llqvmmkhlnwvlmkvtfy---

---llwfklgqilmi*emy*plvikl*hrsfsi*idnhqleiiiimngkilgkismhqiq
d*illqmlkif*vvkllclvnklvpsigmpefgqellvslkdyglllkliislllslvla
nslviclvvvfplvhyslifahylmiylfllnqfinyqkmkln*f*kknknsfvnfinki
kil*nf

Frame B:
ndk*ifnnffnifncnn*sfitiik*ttikcstistrsyndwl*ysiisrinin*k*y*i
nnikyfnfkisefifpicfk*cfkr*lfkyrviinyck***nt*igy**kllfi---

---yfgsnldky**skrctsrwl*nynivlflfr*titnwkslsl*marylgrflcirsk
ikyyfkc*kyfrw*syyvw*ts*yrqlgcqslaksywyl*kimvcy*n**yhscspsywp
ill*yvsswyflwsiip*fllit**fifff*tslsiikr*n*infkkkikill*tl*ik*
kyyktl

Frame C:
MINKFLTIFLIFSIVIIKVLSQSSNEQPLNVVPYPQEVTMIGCNIPLSVGSISIKSNIES
TILSISISRYQSLFFPFVSNNVLKDSSSNIELSLIIASDDETLELGIDESYFL---

---TLVQTWTNINDLRDVLAAGYKTITSFFFYLDRQSPTGNHYHYEWQDTWEDFYASDPR
LNITSNAENILGGEATMFGEQVSTVNWDARVWPRAIGISERLWSATEINNITLALPRIGQ
FSCDMSRRGISSGPLFPDFCSLPDDLSFSFKPVYQLSKDEIKLILKKK*kffcklyk*nk
niikl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLI877 (SLI877Q) /CSM/SL/SLI8-D/SLI877Q.Seq.d/ 1564 0.0
AFN575 (AFN575Q) /CSM/AF/AFN5-D/AFN575Q.Seq.d/ 950 0.0
VHK827 (VHK827Q) /CSM/VH/VHK8-B/VHK827Q.Seq.d/ 924 0.0
VFK348 (VFK348Q) /CSM/VF/VFK3-B/VFK348Q.Seq.d/ 906 0.0
VFC223 (VFC223Q) /CSM/VF/VFC2-A/VFC223Q.Seq.d/ 791 0.0
VFA766 (VFA766Q) /CSM/VF/VFA7-C/VFA766Q.Seq.d/ 757 0.0
VFO641 (VFO641Q) /CSM/VF/VFO6-B/VFO641Q.Seq.d/ 638 0.0
VFM185 (VFM185Q) /CSM/VF/VFM1-D/VFM185Q.Seq.d/ 626 e-178
AFJ603 (AFJ603Q) /CSM/AF/AFJ6-A/AFJ603Q.Seq.d/ 404 e-112
VSB886 (VSB886Q) /CSM/VS/VSB8-D/VSB886Q.Seq.d/ 125 1e-27

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

J04065|J04065.1 D.discoideum beta-N-acetylhexosaminidase (nagA) mRNA, complete cds. 80 1e-56 8
AX347157|AX347157.1 Sequence 2228 from Patent WO0200928. 44 1e-04 3
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 40 0.001 7
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2. 36 0.002 9
AC140735|AC140735.4 Rattus norvegicus clone CH230-199G5, WORKING DRAFT SEQUENCE, 50 unordered pieces. 50 0.006 7
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 42 0.007 12
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence. 46 0.008 10
AY194283|AY194283.1 Diaeretiella rapae haplotype W cytochrome oxidase subunit I (COI) gene, partial cds; tRNA-Leu and cytochrome oxidase subunit II genes, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial genes for mitochondrial products. 50 0.013 2
AY194284|AY194284.1 Diaeretiella rapae haplotype X cytochrome oxidase subunit I (COI) gene, partial cds; tRNA-Leu and cytochrome oxidase subunit II genes, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial genes for mitochondrial products. 50 0.013 2
AY194282|AY194282.1 Diaeretiella rapae haplotype V cytochrome oxidase subunit I (COI) gene, partial cds; tRNA-Leu and cytochrome oxidase subunit II genes, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial genes for mitochondrial products. 50 0.013 2
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54SC9) RecName: Full=Beta-hexosaminidase subunit A2; ... 332 1e-89
(P13723) RecName: Full=Beta-hexosaminidase subunit A1; ... 226 6e-58
S70340_1(S70340|pid:none) HEXB=beta-hexosaminidase beta subunit ... 93 1e-17
(P49614) RecName: Full=Beta-hexosaminidase subunit beta; ... 93 1e-17
(P49009) RecName: Full=Beta-hexosaminidase subunit alpha; ... 92 3e-17
U09735_1(U09735|pid:none) Entamoeba histolytica HM1:IMSS beta-N-... 92 3e-17
AF014805_1(AF014805|pid:none) Felis catus beta-N-acetylhexosamin... 87 8e-16
(Q6AXR4) RecName: Full=Beta-hexosaminidase subunit beta; ... 87 8e-16
(Q5RC84) RecName: Full=Beta-hexosaminidase subunit alpha; ... 87 1e-15
M13520_1(M13520|pid:none) Human alpha-polypeptide of N-acetyl-al... 87 1e-15
protein update 2009. 6. 5
PSORT

psg: 1.00 gvh: 0.62 alm: 0.19 top: 0.40 tms: 0.07 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: mitochondrial
16.0 %: cytoplasmic
16.0 %: endoplasmic reticulum
12.0 %: Golgi
12.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SLI877 is mit

5' end seq. ID SLI877F
5' end seq.
>SLI877F.Seq
AAATGATAAATAAATTTTTAACAATTTTTTTAATATTTTCAATTGTAATAATTAAAGTTT
TATCACAATCATCAAATGAACAACCATTAAATGTAGTACCATATCCACAAGAAGTTACAA
TGATTGGTTGTAATATTCCATTATCAGTAGGATCAATATCAATTAAAAGTAATATTGAAT
CAACAATATTAAGTATTTCAATTTCAAGATATCAGAGTTTATTTTTCCCATTTGTTTCAA
ATAATGTTTTAAAAGATAGCTCTTCAAATATCGAGTTATCATTAATTATTGCAAGTGATG
ATGAAACACTTGAATTGGGTATTGATGAAAGTTACTTTTTATT----------
Length of 5' end seq. 343
3' end seq. ID SLI877Z
3' end seq.
>SLI877Z.Seq
----------CTACTTTGGTTCAAACTTGGACAAATATTAATGATCTAAGAGATGTACTA
GCCGCTGGTTATAAAACTATAACATCGTTCTTTTTCTATTTAGATAGACAATCACCAACT
GGAAATCATTATCATTATGAATGGCAAGATACTTGGGAAGATTTCTATGCATCAGATCCA
AGATTAAATATTACTTCAAATGCTGAAAATATTTTAGGTGGTGAAGCTACTATGTTTGGT
GAACAAGTTAGTACCGTCAATTGGGATGCCAGAGTTTGGCCAAGAGCTATTGGTATCTCT
GAAAGATTATGGTCTGCTACTGAAATTAATAATATCACTCTTGCTCTCCCTCGTATTGGC
CAATTCTCTTGTGATATGTCTCGTCGTGGTATTTCCTCTGGTCCATTATTCCCTGATTTT
TGCTCATTACCTGATGATTTATCTTTTTCTTTTAAACCAGTTTATCAATTATCAAAAGAT
GAAATTAAATTAATTTTAAAAAAAAAATAAAAATTCTTTTGTAAACTTTATAAATAAAAT
AAAAATATTATAAAACTTTA
Length of 3' end seq. 550
Connected seq. ID SLI877P
Connected seq.
>SLI877P.Seq
AAATGATAAATAAATTTTTAACAATTTTTTTAATATTTTCAATTGTAATAATTAAAGTTT
TATCACAATCATCAAATGAACAACCATTAAATGTAGTACCATATCCACAAGAAGTTACAA
TGATTGGTTGTAATATTCCATTATCAGTAGGATCAATATCAATTAAAAGTAATATTGAAT
CAACAATATTAAGTATTTCAATTTCAAGATATCAGAGTTTATTTTTCCCATTTGTTTCAA
ATAATGTTTTAAAAGATAGCTCTTCAAATATCGAGTTATCATTAATTATTGCAAGTGATG
ATGAAACACTTGAATTGGGTATTGATGAAAGTTACTTTTTATT----------CTACTTT
GGTTCAAACTTGGACAAATATTAATGATCTAAGAGATGTACTAGCCGCTGGTTATAAAAC
TATAACATCGTTCTTTTTCTATTTAGATAGACAATCACCAACTGGAAATCATTATCATTA
TGAATGGCAAGATACTTGGGAAGATTTCTATGCATCAGATCCAAGATTAAATATTACTTC
AAATGCTGAAAATATTTTAGGTGGTGAAGCTACTATGTTTGGTGAACAAGTTAGTACCGT
CAATTGGGATGCCAGAGTTTGGCCAAGAGCTATTGGTATCTCTGAAAGATTATGGTCTGC
TACTGAAATTAATAATATCACTCTTGCTCTCCCTCGTATTGGCCAATTCTCTTGTGATAT
GTCTCGTCGTGGTATTTCCTCTGGTCCATTATTCCCTGATTTTTGCTCATTACCTGATGA
TTTATCTTTTTCTTTTAAACCAGTTTATCAATTATCAAAAGATGAAATTAAATTAATTTT
AAAAAAAAAATAAAAATTCTTTTGTAAACTTTATAAATAAAATAAAAATATTATAAAACT
TTA
Length of connected seq. 893
Full length Seq ID -
Full length Seq. -
Length of full length seq. -