SLI839
Library SL
(Link to library)
Clone ID SLI839
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15453-1
Original site URL
Representative seq. ID SLI839Z
(Link to Original site)
Representative DNA sequence
>SLI839 (SLI839Q) /CSM/SL/SLI8-B/SLI839Q.Seq.d/
XXXXXXXXXXTGATAACTCTCACAATGCCATCCGTAACGACCCACGTTACAACTGGATCT
GTAAACCAGTCCACAAACATAGAGAATTAAGAGGTTTAACCTCCGTTGGTATCAAAGCCC
GTGGTCTCCGTAGAAAAGGTACCCACAGAGCCAGCAAAACTAGACCATCAAGACAAGCCA
ACTACAAACGTAGAAACACCGTCGTTTTCCACAGATACAGATAAACAAACAAACATTAAT
ATTCATTTTGTTTGTGTCCAAGTATTCTAATAAAATGTTATATTTTCCCCACCNTAAAAA
AAAAAAAAAAAAAAAAAAA
sequence update 1998. 9. 7
Translated Amino Acid sequence
---DNSHNAIRNDPRYNWICKPVHKHRELRGLTSVGIKARGLRRKGTHRASKTRPSRQAN
YKRRNTVVFHRYR*tnkh*ysfclcpsilikcyifptxkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---DNSHNAIRNDPRYNWICKPVHKHRELRGLTSVGIKARGLRRKGTHRASKTRPSRQAN
YKRRNTVVFHRYR*tnkh*ysfclcpsilikcyifptxkkkkkkk


Frame B:
---itltmpsvtthvttgsvnqstnien*ev*pplvskpvvsvekvptepakldhqdkpt
tnvetpsfstdtdkqtninihfvcvqvf**nvifspp*kkkkkkk


Frame C:
---*lsqchp*rptlqldl*tspqt*rikrfnlrwyqspwsp*krypqsqqn*tiktsql
qt*khrrfpqiqinkqtlifilfvskysnkmlyfphxkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLI839 (SLI839Q) /CSM/SL/SLI8-B/SLI839Q.Seq.d/ 561 e-159
VSI725 (VSI725Q) /CSM/VS/VSI7-B/VSI725Q.Seq.d/ 553 e-157
VSH331 (VSH331Q) /CSM/VS/VSH3-B/VSH331Q.Seq.d/ 553 e-157
VHI836 (VHI836Q) /CSM/VH/VHI8-B/VHI836Q.Seq.d/ 553 e-157
VFE550 (VFE550Q) /CSM/VF/VFE5-C/VFE550Q.Seq.d/ 553 e-157
SLG724 (SLG724Q) /CSM/SL/SLG7-A/SLG724Q.Seq.d/ 553 e-157
SLG705 (SLG705Q) /CSM/SL/SLG7-A/SLG705Q.Seq.d/ 553 e-157
SLG566 (SLG566Q) /CSM/SL/SLG5-C/SLG566Q.Seq.d/ 553 e-157
SLE288 (SLE288Q) /CSM/SL/SLE2-D/SLE288Q.Seq.d/ 553 e-157
SLE203 (SLE203Q) /CSM/SL/SLE2-A/SLE203Q.Seq.d/ 553 e-157

own update 2002.12.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 553 e-154 1
BE574892|BE574892.1 E09-P2 Triphysaria versicolor root-tip, early DMBQ-induced transcript cDNA library Triphysaria versicolor cDNA, mRNA sequence. 52 0.004 1
BE574870|BE574870.1 A06-R Triphysaria versicolor root-tip, early DMBQ-induced transcript cDNA library Triphysaria versicolor cDNA, mRNA sequence. 52 0.004 1
BU496260|BU496260.1 PfESToac05g10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:R15A_PICMA O65050 60S RIBOSOMAL PROTEIN L15-1. ;, mRNA sequence. 50 0.016 1
BU496434|BU496434.1 PfESToab50b05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:R15A_PICMA O65050 60S RIBOSOMAL PROTEIN L15-1. ;, mRNA sequence. 50 0.016 1
BI936089|BI936089.1 PfESToaa25h12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:R15A_PICMA O65050 60S RIBOSOMAL PROTEIN L15-1. ;, mRNA sequence. 50 0.016 1
CA855517|CA855517.1 PfESToac49h02.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:R15A_PICMA O65050 60S RIBOSOMAL PROTEIN L15-1. ;, mRNA sequence. 50 0.016 1
BU495424|BU495424.1 PfESToab72g08.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:R15A_PICMA O65050 60S RIBOSOMAL PROTEIN L15-1. ;, mRNA sequence. 50 0.016 1
BQ596720|BQ596720.1 PfESToab21g01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:R15A_PICMA O65050 60S RIBOSOMAL PROTEIN L15-1. ;, mRNA sequence. 50 0.016 1
BQ452069|BQ452069.1 PfESToaa91e11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:R15A_PICMA O65050 60S RIBOSOMAL PROTEIN L15-1. ;, mRNA sequence. 50 0.016 1
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86K01) RecName: Full=60S ribosomal protein L15; &AC116984_54(... 150 2e-35
AB181483_1(AB181483|pid:none) Bromus inermis BiRP2 mRNA for ribo... 103 2e-21
EF145338_1(EF145338|pid:none) Populus trichocarpa clone WS01123_... 101 9e-21
AY037163_1(AY037163|pid:none) Homo sapiens ribosomal protein L15... 101 9e-21
AC090874_14(AC090874|pid:none) Oryza sativa chromosome 3 BAC OJ1... 99 3e-20
AC137610_6(AC137610|pid:none) Oryza sativa (japonica cultivar-gr... 99 3e-20
AL161546_20(AL161546|pid:none) Arabidopsis thaliana DNA chromoso... 99 5e-20
CS560362_1(CS560362|pid:none) Sequence 949 from Patent WO2006032... 98 8e-20
EU285001_1(EU285001|pid:none) TSA: Elaeis guineensis EgEfMPOB001... 97 1e-19
CS559694_1(CS559694|pid:none) Sequence 281 from Patent WO2006032... 96 4e-19
protein update 2009. 6. 5
PSORT

psg: 0.75 gvh: 0.41 alm: 0.65 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: Golgi

>> prediction for SLI839 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLI839Z
3' end seq.
>SLI839Z.Seq
----------TGATAACTCTCACAATGCCATCCGTAACGACCCACGTTACAACTGGATCT
GTAAACCAGTCCACAAACATAGAGAATTAAGAGGTTTAACCTCCGTTGGTATCAAAGCCC
GTGGTCTCCGTAGAAAAGGTACCCACAGAGCCAGCAAAACTAGACCATCAAGACAAGCCA
ACTACAAACGTAGAAACACCGTCGTTTTCCACAGATACAGATAAACAAACAAACATTAAT
ATTCATTTTGTTTGTGTCCAAGTATTCTAATAAAATGTTATATTTTCCCCACCNTAAAAA
AAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 309
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -