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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI815
Library SL
(Link to library)
Clone ID SLI815
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15397-1|Contig-U16260-1
Original site URL
Representative seq. ID SLI815P
(Link to Original site)
Representative DNA sequence 
>SLI815 (SLI815Q) /CSM/SL/SLI8-A/SLI815Q.Seq.d/
AAAGATGAAAAAGAATAACAAATTTTTCGCAATGAAAAAGTTGGATAAATCAAAAATGAT
TGAAAAGCATCAAACAATACATGTAAGAAGTGAACGTGATATTTTAGCTGATAGTAATAA
TATTCATGGAAGTAATCCATGGATTGTTAGTTTATATTATTCATTCCAAGATGCAAACTT
TTTATATTTAATTATGGAATATGTCCCAGGTGGTGATATGATGACACAATTAATTAAATA
TGATACATTTACAGAAGATGCAACTAGATTTTATATAGCAGAAACTGTTTTAGCACTTCA
TTCAATTCATAAACTXXXXXXXXXXAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCA
CAAGATCTCATTGAACGTTTCCTCACCGATCCAATGACTCGTATTGGTTTTAATGGTGTC
GAGGAGATTCAATCTCATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACC
AGACCTCCAATCATTCCACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTAT
GAAGAGGAACAACAACCTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATC
ACTTCTTTCGATATCCCTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGAT
GCCTTTGGTAGTGTAAACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTTT
GGTAGTATAAATAATAGAGATTCTTTACAAGGTGCAAATATGTAAACAGAACAAAAAAAA
AAAAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
KMKKNNKFFAMKKLDKSKMIEKHQTIHVRSERDILADSNNIHGSNPWIVSLYYSFQDANF
LYLIMEYVPGGDMMTQLIKYDTFTEDATRFYIAETVLALHSIHK---

---AKAEVNLSPEAQDLIERFLTDPMTRIGFNGVEEIQSHPFFKGVDWRRLRETRPPIIP
QLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKITSFDIPFIGYTYRNFDAMRDAFGSVN
SRDAFGSINSREAFGSINNRDSLQGANM*teqkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kdeke*qifrnekvg*iknd*kasnntckk*t*yfs****yswk*smdc*filfiprckl
fifnygicprw*yddtin*i*yiyrrcn*ilysrncfstsfns*t---

---kqkqk*t*vqkhkislnvsspiq*lvlvlmvsrrfnlihslkvsiged*gkpdlqsf
hnslhqpilqilitmkrnnnlnqcnqfnqnqeersllsislslvtlivilmp*emplvv*
tvemplvv*ivekllvv*iieilykvqickqnkkkk

Frame B:
KMKKNNKFFAMKKLDKSKMIEKHQTIHVRSERDILADSNNIHGSNPWIVSLYYSFQDANF
LYLIMEYVPGGDMMTQLIKYDTFTEDATRFYIAETVLALHSIHK---

---sksrsklksrstrsh*tfphrsndsywf*wcrgdsissil*rcrlektkgnqtsnhs
ttlftnryfkf*sl*rgttt*tnatssikikkkdhffrypfhwlhls*f*cherclw*ck
q*rclw*yk**rsfw*yk**rfftrckyvnrtkkkk

Frame C:
r*kritnfsq*kswinqk*lksikqym*evnvif*liviifmevihgllvyiihskmqtf
yi*lwnmsqvvi**hn*lnmihlqkmqldfi*qklf*hfiqfin---

---AKAEVNLSPEAQDLIERFLTDPMTRIGFNGVEEIQSHPFFKGVDWRRLRETRPPIIP
QLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKITSFDIPFIGYTYRNFDAMRDAFGSVN
SRDAFGSINSREAFGSINNRDSLQGANM*teqkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI815 (SLI815Q) /CSM/SL/SLI8-A/SLI815Q.Seq.d/                       1471   0.0
SSM651 (SSM651Q) /CSM/SS/SSM6-C/SSM651Q.Seq.d/                        878   0.0
CFJ206 (CFJ206Q) /CSM/CF/CFJ2-A/CFJ206Q.Seq.d/                        870   0.0
CFF849 (CFF849Q) /CSM/CF/CFF8-C/CFF849Q.Seq.d/                        864   0.0
SHK872 (SHK872Q) /CSM/SH/SHK8-C/SHK872Q.Seq.d/                        856   0.0
SSI880 (SSI880Q) /CSM/SS/SSI8-D/SSI880Q.Seq.d/                        848   0.0
VFO102 (VFO102Q) /CSM/VF/VFO1-A/VFO102Q.Seq.d/                        817   0.0
SFF332 (SFF332Q) /CSM/SF/SFF3-B/SFF332Q.Seq.d/                        781   0.0
CFE380 (CFE380Q) /CSM/CF/CFE3-D/CFE380Q.Seq.d/                        737   0.0
SLC435 (SLC435Q) /CSM/SL/SLC4-B/SLC435Q.Seq.d/                        694   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG893616|BG893616.1 kt11h10.y2 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q21613 Q21613 NDR PROTEIN KINASE ;, mRNA sequence.    44  8e-08  3
BE432804|BE432804.1 EST399429 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG10L10, mRNA sequence.    44  1e-05  2
BH204655|BH204655.1 Sm1-56F19.TR Sm1 Schistosoma mansoni genomic clone Sm1-56F19, DNA sequence.    52  1e-05  2
Z71437|Z71437.1 S.cerevisiae chromosome XIV reading frame ORF YNL161w.    40  2e-05  4
X92517|X92517.1 S.cerevisiae PSD1, N1696, SKO1, N1706, N1710, N1714, N1718, SCL41A,  N1727, YGP1, N1735, N1739, N1743, N1747, N1751, YCK2, N1761, N1765,  RPC31, N1773, N1774, N1777, N1780, N1785, N1790 genes.    40  0.001  5
E24614|E24614.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    40  0.001  3
AX507707|AX507707.1 Sequence 2402 from Patent WO0216655.          54  0.003  1
BT008882|BT008882.1 Arabidopsis thaliana At4g33080 mRNA, complete cds.    54  0.003  1
BT002500|BT002500.1 Arabidopsis thaliana putative protein kinase (At4g33080) mRNA, complete cds.    54  0.003  1
E24613|E24613.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    40  0.004  3
dna update 2003. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6TGC6) RecName: Full=Serine/threonine-protein kinase CBK1;    ...   126   7e-28
(Q54Y26) RecName: Full=Probable serine/threonine-protein kinase ...   122   1e-26
T47255(T47255) serine/threonine kinase, illuminated mycelia [imp...   120   6e-26
(P38679) RecName: Full=Serine/threonine-protein kinase cot-1;   ...   120   6e-26
M83093_1(M83093|pid:none) Neurospora crassa cAMP-dependent prote...   120   6e-26
(Q6CFS5) RecName: Full=Serine/threonine-protein kinase CBK1;    ...   119   1e-25
(P53894) RecName: Full=Serine/threonine-protein kinase CBK1;    ...   119   1e-25
AM920437_499(AM920437|pid:none) Penicillium chrysogenum Wisconsi...   118   2e-25
AP007155_892(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   116   7e-25
DQ116039_1(DQ116039|pid:none) Aspergillus oryzae serine/threonin...   116   7e-25
protein update 2009. 6. 5
PSORT 

 psg: 0.63  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLI815 is cyt
5' end seq. ID SLI815F
5' end seq. 
>SLI815F.Seq
AAAGATGAAAAAGAATAACAAATTTTTCGCAATGAAAAAGTTGGATAAATCAAAAATGAT
TGAAAAGCATCAAACAATACATGTAAGAAGTGAACGTGATATTTTAGCTGATAGTAATAA
TATTCATGGAAGTAATCCATGGATTGTTAGTTTATATTATTCATTCCAAGATGCAAACTT
TTTATATTTAATTATGGAATATGTCCCAGGTGGTGATATGATGACACAATTAATTAAATA
TGATACATTTACAGAAGATGCAACTAGATTTTATATAGCAGAAACTGTTTTAGCACTTCA
TTCAATTCATAAACT----------
Length of 5' end seq. 315
3' end seq. ID SLI815Z
3' end seq. 
>SLI815Z.Seq
----------AAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAA
CGTTTCCTCACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCT
CATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAGACCTCCAATCATT
CCACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTATGAAGAGGAACAACAA
CCTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCACTTCTTTCGATATC
CCTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTA
AACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTTTGGTAGTATAAATAAT
AGAGATTCTTTACAAGGTGCAAATATGTAAACAGAACAAAAAAAAAAAAA
Length of 3' end seq. 460
Connected seq. ID SLI815P
Connected seq. 
>SLI815P.Seq
AAAGATGAAAAAGAATAACAAATTTTTCGCAATGAAAAAGTTGGATAAATCAAAAATGAT
TGAAAAGCATCAAACAATACATGTAAGAAGTGAACGTGATATTTTAGCTGATAGTAATAA
TATTCATGGAAGTAATCCATGGATTGTTAGTTTATATTATTCATTCCAAGATGCAAACTT
TTTATATTTAATTATGGAATATGTCCCAGGTGGTGATATGATGACACAATTAATTAAATA
TGATACATTTACAGAAGATGCAACTAGATTTTATATAGCAGAAACTGTTTTAGCACTTCA
TTCAATTCATAAACT----------AAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCA
CAAGATCTCATTGAACGTTTCCTCACCGATCCAATGACTCGTATTGGTTTTAATGGTGTC
GAGGAGATTCAATCTCATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACC
AGACCTCCAATCATTCCACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTAT
GAAGAGGAACAACAACCTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATC
ACTTCTTTCGATATCCCTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGAT
GCCTTTGGTAGTGTAAACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTTT
GGTAGTATAAATAATAGAGATTCTTTACAAGGTGCAAATATGTAAACAGAACAAAAAAAA
AAAAA
Length of connected seq. 775
Full length Seq ID -
Full length Seq. -
Length of full length seq. -