>SLI786 (SLI786Q) /CSM/SL/SLI7-D/SLI786Q.Seq.d/
XXXXXXXXXXAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGA
CTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTA
TGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCT
TAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTC
TCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATA
AGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTA
GATTTCAGAGAGTTATCAAACAT

---IGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRAL
TLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*ir
fqrvikh

Frame A:
---IGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRAL
TLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*ir
fqrvikh


Frame B:
---svklnqktvnksqpvrlnsi*lkrlsiqwvvslttvwlnmns*clkvvllvqerep*
p*ervsplklvvlpsrkslsnssippaslvtvfikplkirlnisasrnqdqlrlkfnkld
frelsn


Frame C:
---rssstrrr*tnlnr*d*irfn*kdyqsngwfrslryg*t*ilna*rlccwskkesln
lkkeyhhsnwsccprenhsqihrylqqvwsrsssnr*r*d*ifrrqeikin*glnsin*i
sesyqt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI163 (VSI163Q) /CSM/VS/VSI1-C/VSI163Q.Seq.d/                        739   0.0
VFN362 (VFN362Q) /CSM/VF/VFN3-C/VFN362Q.Seq.d/                        739   0.0
VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/                        739   0.0
VFF813 (VFF813Q) /CSM/VF/VFF8-A/VFF813Q.Seq.d/                        739   0.0
VFF223 (VFF223Q) /CSM/VF/VFF2-A/VFF223Q.Seq.d/                        739   0.0
VFD735 (VFD735Q) /CSM/VF/VFD7-B/VFD735Q.Seq.d/                        739   0.0
VFC683 (VFC683Q) /CSM/VF/VFC6-D/VFC683Q.Seq.d/                        739   0.0
SLK737 (SLK737Q) /CSM/SL/SLK7-B/SLK737Q.Seq.d/                        739   0.0
SLK605 (SLK605Q) /CSM/SL/SLK6-A/SLK605Q.Seq.d/                        739   0.0
SLK562 (SLK562Q) /CSM/SL/SLK5-C/SLK562Q.Seq.d/                        739   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds.   466  0.0  2
BQ590105|BQ590105.1 E012844-024-019-M20-T7 MPIZ-ADIS-024-storage root Beta vulgaris cDNA clone 024-019-M20 3-PRIME, mRNA sequence.    46  1e-04  2
CA904584|CA904584.1 PCS01796X5 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 60S ribosomal protein L3, mRNA sequence.    42  5e-04  2
CA904604|CA904604.1 PCSC15981 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 60S ribosomal protein L3, mRNA sequence.    42  6e-04  2
CA904596|CA904596.1 PCSC11746 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 60S ribosomal protein L3, mRNA sequence.    42  6e-04  2
CA899885|CA899885.1 PCS00240M13R Scarlet Runner Bean Suspensor Region pCR2.1 Phaseolus coccineus cDNA 5' similar to 60S ribosomal protein L3, mRNA sequence.    42  7e-04  2
BI323825|BI323825.1 kt45c07.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL3_TOXCA P49149 60S RIBOSOMAL PROTEIN L3. ;, mRNA sequence.    50  0.002  2
BI379782|BI379782.1 BFLG1_001413 Amphioxus 5-6 hrs cDNA library (Name convention: BFLG or MPMGp498) Branchiostoma floridae cDNA clone MPMGp498A10114 5', mRNA sequence.    52  0.005  1
BI378720|BI378720.1 BFLG1_000351 Amphioxus 5-6 hrs cDNA library (Name convention: BFLG or MPMGp498) Branchiostoma floridae cDNA clone MPMGp498A10114 5', mRNA sequence.    52  0.005  1
BE776610|BE776610.1 MY-18-B-10 PinfestansMY Phytophthora infestans cDNA, mRNA sequence.    52  0.005  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   225   4e-58
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   131   8e-30
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...   130   1e-29
AM048985_1(AM048985|pid:none) Micromalthus debilis partial mRNA ...   128   5e-29
EU999182_1(EU999182|pid:none) Artemia franciscana ribosomal prot...   128   7e-29
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM...   128   7e-29
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15...   127   9e-29
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib...   127   1e-28
AK151084_1(AK151084|pid:none) Mus musculus bone marrow macrophag...   126   2e-28
AK151142_1(AK151142|pid:none) Mus musculus bone marrow macrophag...   126   2e-28

 psg: 0.75  gvh: 0.39  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SLI786 is nuc

>SLI786Z.Seq
----------AATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGA
CTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTA
TGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCT
TAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTC
TCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATA
AGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTA
GATTTCAGAGAGTTATCAAACAT