>SLI758 (SLI758Q) /CSM/SL/SLI7-C/SLI758Q.Seq.d/
XXXXXXXXXXTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTGGAAAGAT
GGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCACCACCAGTCT
CTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAATCTCCAT
TCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAATCGCTACTA
CCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATCATTCAAA
AGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTG
CAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCTCAAAATG
CTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCACGAAAATAATA
AAATCTTTGATGAAATTCAAGTACTCTTAGGTTTATTATATTTAGCTGTTGTTGCTAATT
AGAGA

---HTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQSVPQSPF
STGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKESA
NFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFDEIQVLLGLLYLAVVAN*
r

Frame A:
---HTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQSVPQSPF
STGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKESA
NFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFDEIQVLLGLLYLAVVAN*
r


Frame B:
---iplkrk*skrqrdwkdgv*rlthqllphqalphhqslvplrlhq*lqpnnlyhnlhs
qlvlpslsikviaisqsllpnnslivsfsllnplnksfkrkplivilsslfswi**rnlq
tlv*lslqlpqclsislkmlvnslvlsmn*lktlltkiikslmkfkys*vyyi*llllir


Frame C:
---yl*reneargkeigkmgfkd*ltncyltkhylttsl*yhsgctsdsnrticttisil
nwccrlcqsks*qspnryyptip*syrslc*ir*tnhskenl*s*ychlyshgfskgick
lwydslfnypnvfrylskcw*trwccq*is*rhcsrk**nl**nsstlrfiifsccc*le

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI758 (SLI758Q) /CSM/SL/SLI7-C/SLI758Q.Seq.d/                       1061   0.0
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                       1053   0.0
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                       1053   0.0
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/                       1053   0.0
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/                       1045   0.0
SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/                        969   0.0
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/                        932   0.0
SSH396 (SSH396Q) /CSM/SS/SSH3-D/SSH396Q.Seq.d/                        920   0.0
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/                        920   0.0
AFF249 (AFF249Q) /CSM/AF/AFF2-C/AFF249Q.Seq.d/                        918   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds.  1049  0.0  1
AC100613|AC100613.1 Mus musculus clone RP23-160F24, LOW-PASS SEQUENCE SAMPLING.    40  1.3  3
AC116578|AC116578.3 Mus musculus chromosome 9 clone RP23-264P8, complete sequence.    38  1.7  3
AC019295|AC019295.3 Homo sapiens clone RP11-24O11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44  1.7  1
BX119902|BX119902.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-137I24.    44  1.7  1
AC083781|AC083781.2 Homo sapiens chromosome 1 clone RP11-225N18 map 1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    44  1.7  1
BX005004|BX005004.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44  2.3  3
AL116605|AL116605.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    36  4.4  2
AC109962|AC109962.4 Rattus norvegicus clone CH230-135D24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40  4.5  2
AC022751|AC022751.3 Homo sapiens clone RP11-198I7, WORKING DRAFT SEQUENCE, 17 unordered pieces.    36  4.9  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   255   6e-67
CP000090_1303(CP000090|pid:none) Ralstonia eutropha JMP134 chrom...    37   0.43
CP001408_431(CP001408|pid:none) Burkholderia pseudomallei MSHR34...    36   0.73
FM992688_1247(FM992688|pid:none) Candida dubliniensis CD36 chrom...    35   1.6
EU565733_1(EU565733|pid:none) Uncultured soil bacterium clone gl...    35   1.6
CP000010_2763(CP000010|pid:none) Burkholderia mallei ATCC 23344 ...    34   2.1
CP000526_104(CP000526|pid:none) Burkholderia mallei SAVP1 chromo...    34   2.1
CP000151_2972(CP000151|pid:none) Burkholderia sp. 383 chromosome...    34   2.8
AP009385_2728(AP009385|pid:none) Burkholderia multivorans ATCC 1...    33   3.6
AM260479_1383(AM260479|pid:none) Ralstonia eutropha H16 chromoso...    33   3.6

 psg: 0.75  gvh: 0.47  alm: 0.30  top: 0.63  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SLI758 is cyt

>SLI758Z.Seq
----------TCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTGGAAAGAT
GGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCACCACCAGTCT
CTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAATCTCCAT
TCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAATCGCTACTA
CCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATCATTCAAA
AGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTG
CAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCTCAAAATG
CTGGTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCACGAAAATAATA
AAATCTTTGATGAAATTCAAGTACTCTTAGGTTTATTATATTTAGCTGTTGTTGCTAATT
AGAGA