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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI750
Library SL
(Link to library)
Clone ID SLI750
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15479-1
Original site URL
Representative seq. ID SLI750Z
(Link to Original site)
Representative DNA sequence 
>SLI750 (SLI750Q) /CSM/SL/SLI7-C/SLI750Q.Seq.d/
XXXXXXXXXXGATTTAAAGATTGCCACTAAAATCAACAGAGGTCAAATCGATATCGTCAA
TGAAGTCCACATCATTAAAACCGGTCAAAAAGTTGGTGCCTCAGAAGCTACCCTCTTACA
AAAATTGAACATCAAACCATTCACCTATGGTTTAGAACCAAAAATCATCTATGATGCTGG
TGCCTGTTATTCACCATCTATCTCTGAAGAAGATCTCATCAACAAATTCAAACAAGGTAT
CTTCAACATTGCTGCCATCTCCTTGGAAATTGGTTACCCAACCGTTGCTTCAATTCCACA
TTCAGTCATGAATGCTTTCAAGAATTTATTAGCCATCTCATTCGAAACCTCTTACACTTT
CGATGCTGCTGAAAAATTCAAATCAGCCGCTGCTGCTGCCCCAGTTGCTGCCGCTCCATC
CGCTGCTGCTCCAGCTGCCGCTGCCAAGAAAGTCGTCGTCGAAGAAAAGAAAGAAGAATC
AGATGATGATATGGGTATGGGTCTCTTTGATTAAGATTTGAATAAATAAATTTTTTTTTT
CAAAA
sequence update 1998. 9. 3
Translated Amino Acid sequence 
---LKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGA
CYSPSISEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETSYTFD
AAEKFKSAAAAAPVAAAPSAAAPAAAAKKVVVEEKKEESDDDMGMGLFD*dlnk*ifffk
Translated Amino Acid sequence (All Frames) 
Frame A:
---i*rlplkstevksissmkstslkpvkklvpqklpsykn*tsnhspmv*nqkssmmlv
pvihhlslkkisstnsnkvsstllpspwklvtqpllqfhiqs*mlsriy*pshskpltls
mllknsnqplllpqllplhplllqlplprkssskkrkknqmmiwvwvsliki*inkfffs
k


Frame B:
---fkdch*nqqrsnryrq*sphh*nrskswclrsypltkiehqtihlwfrtknhl*cwc
llftiyl*rrshqqiqtrylqhcchllgnwlpnrcfnstfshecfqefishlirnllhfr
cc*kiqisrcccpsccrsirccsscrcqesrrrrkerrir**ygygsl*lrfe*infffq


Frame C:
---LKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGA
CYSPSISEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETSYTFD
AAEKFKSAAAAAPVAAAPSAAAPAAAAKKVVVEEKKEESDDDMGMGLFD*dlnk*ifffk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH315 (VSH315Q) /CSM/VS/VSH3-A/VSH315Q.Seq.d/                        741   0.0
VHC731 (VHC731Q) /CSM/VH/VHC7-B/VHC731Q.Seq.d/                        741   0.0
VFL888 (VFL888Q) /CSM/VF/VFL8-D/VFL888Q.Seq.d/                        741   0.0
VFK873 (VFK873Q) /CSM/VF/VFK8-D/VFK873Q.Seq.d/                        741   0.0
VFJ633 (VFJ633Q) /CSM/VF/VFJ6-B/VFJ633Q.Seq.d/                        741   0.0
VFH753 (VFH753Q) /CSM/VF/VFH7-C/VFH753Q.Seq.d/                        741   0.0
VFH730 (VFH730Q) /CSM/VF/VFH7-B/VFH730Q.Seq.d/                        741   0.0
VFG702 (VFG702Q) /CSM/VF/VFG7-A/VFG702Q.Seq.d/                        741   0.0
VFF854 (VFF854Q) /CSM/VF/VFF8-C/VFF854Q.Seq.d/                        741   0.0
VFF848 (VFF848Q) /CSM/VF/VFF8-B/VFF848Q.Seq.d/                        741   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X56194|X56194.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P0.   741  0.0  2
CD203589|CD203589.1 Ls_AM1_10H07_T7 Litomosoides sigmodontis adult male 1 Litomosoides sigmodontis cDNA clone Ls_AM1_10H07 5', mRNA sequence.    60  8e-07  2
CB085937|CB085937.1 hg18g03.g1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hg18g03, mRNA sequence.    60  3e-05  1
BF779577|BF779577.1 3230-26 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3230-26, mRNA sequence.    48  7e-05  2
AA901452|AA901452.1 SWOv3MCAM03C04 Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone onch28 5' similar to TR:P91913 P91913 RIBOSOMAL PROTEIN P1 HOMOLOG. ;contains element MER22 repetitive element ;, mRNA sequence.    52  3e-04  2
BG310507|BG310507.1 SWOv3MCAM56B08SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWOv3MCAM56B08 5', mRNA sequence.    52  3e-04  2
AW355195|AW355195.1 PFOvAFCB597K Onchocerca volvulus adult female cDNA following ivermectin (SAW98PF-OvAF) Onchocerca volvulus cDNA clone PFOvAFCB597 5', mRNA sequence.    52  3e-04  2
BE760989|BE760989.1 SWOvL2CAS15E12SK Onchocerca volvulus L2 larvae cDNA (SAW98MLW-OvL2) Onchocerca volvulus cDNA clone SWOvL2CAS15E12 5', mRNA sequence.    52  3e-04  2
AI130065|AI130065.1 SWOvL3CAN53C10SK Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone SWOvL3CAN53C10 5', mRNA sequence.    52  3e-04  2
AA618720|AA618720.1 SWOv3MCA1033SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWmL3CO1033 5', mRNA sequence.    52  3e-04  2
dna update 2003. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

R5DOP0(S14012) ribosomal protein P0 - slime mold (Dictyostelium ...   233   2e-60
(P22685) RecName: Full=60S acidic ribosomal protein P0;               233   2e-60
AY857422_1(AY857422|pid:none) Suberites domuncula L10e/P0 mRNA, ...   149   3e-35
EU069460_1(EU069460|pid:none) Stylophora pistillata 60S acidic r...   139   4e-32
AY072284_1(AY072284|pid:none) Spodoptera frugiperda 60S acidic r...   139   4e-32
AJ457827_1(AJ457827|pid:none) Bombyx mori mRNA for ribosomal P0 ...   139   6e-32
DQ516397_1(DQ516397|pid:none) Strongyloides ratti acidic ribosom...   138   8e-32
BC042268_1(BC042268|pid:none) Xenopus laevis acidic ribosomal pr...   136   4e-31
(Q95140) RecName: Full=60S acidic ribosomal protein P0; AltName:...   135   5e-31
AK222571_1(AK222571|pid:none) Homo sapiens mRNA for ribosomal pr...   135   5e-31
protein update 2009. 6. 5
PSORT 

 psg: 0.58  gvh: 0.39  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLI750 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLI750Z
3' end seq. 
>SLI750Z.Seq
----------GATTTAAAGATTGCCACTAAAATCAACAGAGGTCAAATCGATATCGTCAA
TGAAGTCCACATCATTAAAACCGGTCAAAAAGTTGGTGCCTCAGAAGCTACCCTCTTACA
AAAATTGAACATCAAACCATTCACCTATGGTTTAGAACCAAAAATCATCTATGATGCTGG
TGCCTGTTATTCACCATCTATCTCTGAAGAAGATCTCATCAACAAATTCAAACAAGGTAT
CTTCAACATTGCTGCCATCTCCTTGGAAATTGGTTACCCAACCGTTGCTTCAATTCCACA
TTCAGTCATGAATGCTTTCAAGAATTTATTAGCCATCTCATTCGAAACCTCTTACACTTT
CGATGCTGCTGAAAAATTCAAATCAGCCGCTGCTGCTGCCCCAGTTGCTGCCGCTCCATC
CGCTGCTGCTCCAGCTGCCGCTGCCAAGAAAGTCGTCGTCGAAGAAAAGAAAGAAGAATC
AGATGATGATATGGGTATGGGTCTCTTTGATTAAGATTTGAATAAATAAATTTTTTTTTT
CAAAA
Length of 3' end seq. 535
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -