SLI715
Library SL
(Link to library)
Clone ID SLI715
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11996-1
Original site URL
Representative seq. ID SLI715Z
(Link to Original site)
Representative DNA sequence
>SLI715 (SLI715Q) /CSM/SL/SLI7-A/SLI715Q.Seq.d/
XXXXXXXXXXTGGTAAAATATTTGGAACTGGTGAAGCATTGGAAACAAGTTGTGGTACAC
CAGATTATGTTGCACCAGAAGTTTTAACTGGTGGTTCATATGATAATGCAGTCGATATGT
GGTCAATTGGTGTCATTACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTCAT
CTCAAAACTTATTATTTGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAAT
GGACTCATGTCTCTGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAG
ATCAACGTCATACTGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAAT
CAATTGGTTCTGCTGCTGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATG
ACCAAAGAAGAGGTGGTCAATCTTCAAATAATTAAATTTAATAATAATAATAAT
sequence update 1998. 9. 3
Translated Amino Acid sequence
---GKIFGTGEALETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVITYILLCGFPPFYASS
QNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSGSDQS
IGSAADLHSHFAEKMKKYNDQRRGGQSSNN*i*****


Translated Amino Acid sequence (All Frames)
Frame A:
---GKIFGTGEALETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVITYILLCGFPPFYASS
QNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSGSDQS
IGSAADLHSHFAEKMKKYNDQRRGGQSSNN*i*****


Frame B:
---vkylelvkhwkqvvvhqimlhqkf*lvvhmimqsicgqlvslpifyyvvshhsmlhl
ktyylkkf*plimisqnqnglmslnmpklslet*lskiqinvilpnnvlmtfgslvvinq
lvlllistlislkr*rnimtkeevvnlqiikfnnnnn


Frame C:
---*niwnw*signklwytrlcctrsfnwwfi**csryvvnwchylyfimwfptilcfis
klii*knfnr*l*fprtrmdscl*tcqsfh*klncqrsrstsycqtms**plalw**sin
wfcc*splsfr*kdeei**pkkrwsifk*lnliiii


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLI715 (SLI715Q) /CSM/SL/SLI7-A/SLI715Q.Seq.d/ 864 0.0
SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/ 860 0.0
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/ 860 0.0
SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/ 860 0.0
SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/ 860 0.0
SSA402 (SSA402Q) /CSM/SS/SSA4-A/SSA402Q.Seq.d/ 858 0.0
SSC643 (SSC643Q) /CSM/SS/SSC6-B/SSC643Q.Seq.d/ 852 0.0
SSH378 (SSH378Q) /CSM/SS/SSH3-D/SSH378Q.Seq.d/ 846 0.0
SSJ377 (SSJ377Q) /CSM/SS/SSJ3-D/SSJ377Q.Seq.d/ 837 0.0
VFG381 (VFG381Q) /CSM/VF/VFG3-D/VFG381Q.Seq.d/ 813 0.0

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 860 0.0 1
M64176|M64176.1 D.discoideum myosin light chain kinase (MLCK) mRNA, complete cds. 84 5e-18 2
AZ545332|AZ545332.1 ENTGA35TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 2e-11 3
AZ667950|AZ667950.1 ENTFN88TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 3e-09 2
AZ676962|AZ676962.1 ENTJV60TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 1e-04 2
AZ693041|AZ693041.1 ENTJJ36TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 4e-04 2
BH164301|BH164301.1 ENTSK07TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 4e-04 2
BH146759|BH146759.1 ENTPS59TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 5e-04 2
AU083681|AU083681.1 Cryptomeria japonica mRNA, clone:CC0359, 5' end, expressed in inner bark. 44 0.013 2
CB942682|CB942682.1 AGENCOURT_13842488 NICHD_XGC_Tad2 Xenopus laevis cDNA clone IMAGE:6933377 5', mRNA sequence. 48 0.097 1
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser... 307 7e-83
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso... 148 5e-35
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f... 142 4e-33
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m... 139 2e-32
BC110966_1(BC110966|pid:none) Xenopus laevis calcium/calmodulin-... 138 7e-32
AY335686_1(AY335686|pid:none) Synthetic construct Homo sapiens C... 138 7e-32
AK052401_1(AK052401|pid:none) Mus musculus 13 days embryo lung c... 137 2e-31
(Q8IU85) RecName: Full=Calcium/calmodulin-dependent protein kina... 137 2e-31
(Q8BW96) RecName: Full=Calcium/calmodulin-dependent protein kina... 137 2e-31
BC041721_1(BC041721|pid:none) Xenopus laevis calcium/calmodulin-... 136 2e-31
protein update 2009. 6. 5
PSORT

psg: 0.75 gvh: 0.57 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: mitochondrial
4.0 %: Golgi

>> prediction for SLI715 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLI715Z
3' end seq.
>SLI715Z.Seq
----------TGGTAAAATATTTGGAACTGGTGAAGCATTGGAAACAAGTTGTGGTACAC
CAGATTATGTTGCACCAGAAGTTTTAACTGGTGGTTCATATGATAATGCAGTCGATATGT
GGTCAATTGGTGTCATTACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTCAT
CTCAAAACTTATTATTTGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAAT
GGACTCATGTCTCTGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAG
ATCAACGTCATACTGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAAT
CAATTGGTTCTGCTGCTGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATG
ACCAAAGAAGAGGTGGTCAATCTTCAAATAATTAAATTTAATAATAATAATAAT
Length of 3' end seq. 464
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -