>SLI674 (SLI674Q) /CSM/SL/SLI6-D/SLI674Q.Seq.d/
XXXXXXXXXXTGCTTACGCTGCTAGATGGATCGCTAAATCTTTAGTTGCCGCTGGTCTTG
CCGATCGTTGTTTAGTTCAAGTTTCATACTCTATTGGTGTTGCCAAGCCACTCAGTGTCT
TTGTTGATACCTATGGTACCGGTAAAAAGACTGATGCTGAAATCCTTGCCATCATCGATA
ATAACTTTGATTTACGTCCAGGTTGTTTAATGCGTGACCTCCAATTAACTCGTCCAATTT
TCCAAAAAACTGCCTCTGGTGGTCACTTTGGTAGAAATGATCCAGACTTTACCTGGGAAA
CCGTCAAAGAACTCAAGATGTAAGGATAGATCAATGAATAAATAAGATAGATAAATAAGT
GAAAAAAAAAAAATATAATAATCAAAAAAAAA

---AYAARWIAKSLVAAGLADRCLVQVSYSIGVAKPLSVFVDTYGTGKKTDAEILAIIDN
NFDLRPGCLMRDLQLTRPIFQKTASGGHFGRNDPDFTWETVKELKM*g*ine*ir*ink*
kkkniiikkk

Frame A:
---AYAARWIAKSLVAAGLADRCLVQVSYSIGVAKPLSVFVDTYGTGKKTDAEILAIIDN
NFDLRPGCLMRDLQLTRPIFQKTASGGHFGRNDPDFTWETVKELKM*g*ine*ir*ink*
kkkniiikkk


Frame B:
---ltlldgslnl*lplvlpivv*fkfhtllvlpshsvsllipmvpvkrlmlkslpssii
tliyvqvv*cvtsn*lvqfskklplvvtlvemiqtlpgkpsknsrckdrsmnk*dr*ise
kkki**skk


Frame C:
---lrc*mdr*ifscrwscrslfsssfilywccqatqclc*ylwyr*kd*c*npchhr**
l*ftsrlfna*ppinssnfpknclwwslw*k*srlylgnrqrtqdvridq*inkidk*vk
kkkynnqkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB588 (VSB588Q) /CSM/VS/VSB5-D/VSB588Q.Seq.d/                        696   0.0
SLI674 (SLI674Q) /CSM/SL/SLI6-D/SLI674Q.Seq.d/                        696   0.0
SLI562 (SLI562Q) /CSM/SL/SLI5-C/SLI562Q.Seq.d/                        696   0.0
SLI554 (SLI554Q) /CSM/SL/SLI5-C/SLI554Q.Seq.d/                        696   0.0
SLI301 (SLI301Q) /CSM/SL/SLI3-A/SLI301Q.Seq.d/                        696   0.0
SLC723 (SLC723Q) /CSM/SL/SLC7-A/SLC723Q.Seq.d/                        696   0.0
SLB742 (SLB742Q) /CSM/SL/SLB7-B/SLB742Q.Seq.d/                        696   0.0
SLA192 (SLA192Q) /CSM/SL/SLA1-D/SLA192Q.Seq.d/                        696   0.0
SLA187 (SLA187Q) /CSM/SL/SLA1-D/SLA187Q.Seq.d/                        696   0.0
SLA169 (SLA169Q) /CSM/SL/SLA1-C/SLA169Q.Seq.d/                        696   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CB087876|CB087876.1 hk09d11.g1 Hedyotis centranthoides flower -Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hk09d11, mRNA sequence.    54  3e-08  3
CB088106|CB088106.1 hn60c08.g1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hn60c08, mRNA sequence.    48  0.003  2
U33057|U33057.1 Saccharomyces cerevisiae chromosome IV cosmids 8166, 9787, 9717, and lambda 3073.    52  0.005  1
M23368|M23368.1 Saccharomyces cerevisiae S-adenosylmethionine synthetase (SAM2) gene, complete cds.    52  0.005  1
AX595308|AX595308.1 Sequence 962 from Patent EP1258494.           52  0.005  1
BZ396713|BZ396713.1 EINAB12TF EI_10_12_KB Entamoeba invadens genomic clone EINAB12, DNA sequence.    48  0.079  1
AL407497|AL407497.1 T7 end of clone AV0AA001F06 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    46  0.31  1
BB494253|BB494253.1 Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530038J21, 3' end partial sequence.    46  0.31  1
AC130146|AC130146.4 Rattus norvegicus clone CH230-175H13, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    44  1.2  1
AC103672|AC103672.3 Mus musculus clone RP24-351G3, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  1.2  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54F07) RecName: Full=S-adenosylmethionine synthetase;         ...   211   6e-54
AB461925_1(AB461925|pid:none) Ditylum brightwellii MAT mRNA for ...   149   3e-35
AY324626_1(AY324626|pid:none) Amoeba proteus S-adenosylmethionin...   149   4e-35
FJ404748_1(FJ404748|pid:none) Porphyra yezoensis putative S-aden...   146   2e-34
AB461924_1(AB461924|pid:none) Cylindrotheca closterium MAT mRNA ...   145   4e-34
AB461922_1(AB461922|pid:none) Asterionella glacialis MAT mRNA fo...   144   1e-33
BA000016_2177(BA000016|pid:none) Clostridium perfringens str. 13...   135   6e-31
EU394100_1(EU394100|pid:none) Pinus sylvestris isolate e635 S-ad...   134   7e-31
AC008146_27(AC008146|pid:none) Trypanosoma brucei chromosome 6 c...   134   1e-30
(P50301) RecName: Full=S-adenosylmethionine synthetase 1;       ...   134   1e-30

 psg: 0.91  gvh: 0.50  alm: 0.41  top: 0.47  tms: 0.00  mit: 0.33  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SLI674 is nuc

>SLI674Z.Seq
----------TGCTTACGCTGCTAGATGGATCGCTAAATCTTTAGTTGCCGCTGGTCTTG
CCGATCGTTGTTTAGTTCAAGTTTCATACTCTATTGGTGTTGCCAAGCCACTCAGTGTCT
TTGTTGATACCTATGGTACCGGTAAAAAGACTGATGCTGAAATCCTTGCCATCATCGATA
ATAACTTTGATTTACGTCCAGGTTGTTTAATGCGTGACCTCCAATTAACTCGTCCAATTT
TCCAAAAAACTGCCTCTGGTGGTCACTTTGGTAGAAATGATCCAGACTTTACCTGGGAAA
CCGTCAAAGAACTCAAGATGTAAGGATAGATCAATGAATAAATAAGATAGATAAATAAGT
GAAAAAAAAAAAATATAATAATCAAAAAAAAA