>SLI504 (SLI504Q) /CSM/SL/SLI5-A/SLI504Q.Seq.d/
TTTTTTTTTTTTTTTTTACTATTATTTTATAATTAATTATTTTTGTTGATATTTATTTGA
ACCTAAATCTTTACAAATTTCATAAACAGCAAAAGAAATGGCAACAGTTGGGACAACTTT
AAAATAAGCAGGAATGATACCATGATAGAAAGCAACCAAACCTTCATTTGATAAGATTTT
CTTTGTCGCATCCCAGCCATTTTTATAGAGTACTTTATTACCACCAATACCTTGAATCAT
CATTCTTCTTCTTAAAACATCCAAAGGATAGCAAACAGTCATAGTAACAGCACCACTAAG
AGCACCACAAACAAAATCGCAAATCATATTTACACCTTTTTTCAATTCATTCTCATCAGA
AGCXXXXXXXXXXTCATAGCAGCAATGCATCCAACATAACCTTGACTAAGATTTTGTGAC
ATACCTTGAACTTGTTGAATAATCGTTAATCTTTCAAATCCTGCTGTTGCAGATCTCGAT
ATTGCTCCAGCAATCGATCCTGATACTAAATAATTGACATTTTCTTTTGAAATTGATTTT
TTTGAAACATCTAATTTTGAATTTGAATTGTTTTTATTATTTCCTTTTAAAATTTTATTT
TGATTTTCGTTTTTAATAATATTGTTTAGAATACCATTTTTGGAAATTAAATTGTTATTA
TTATTAATATTATTATTATTATTATTCTTATTATTATTGTTTAAATTTAATAATTTATTA
TTATTTGATTTTATTAATTTTTCTTTATTCAAATTATTGTTTACATTATTGTTCAATTGA
ATGATTAAGGAATTAGCAATATTGTTACCATTTTTGAGACTTTTATAAGTATTTAAGGTT
TTGGATGGTCTATAGGTGTTGCTATTATTTTCTGTCGATTCTTTAAAGCTCTTTTTAAAA
TCAGAACTATTCATTTATATTAAAGGAGGGGAAGAG

ffffflllfyn*lfllifi*t*iftnfinskrngnswdnfkisrndtmiesnqtfi**df
lcripaifieyfittntlnhhsss*NIQRIANSHSNSTTKSTTNKIANHIYTFFQFILIR
S---

---HSSNASNITLTKIL*htlnllnnr*sfkscccrsrycssnrs*y*iidiff*n*ff*
ni*f*i*ivfiisf*nfilifvfnniv*ntifgn*iviiiniiiiiiliiiv*i**fiii
*fy*fffiqiivyiivqlnd*gisnivtifetfisi*gfgwsigvaiifcrffkalfkir
tihly*rrgr

Frame A:
ffffflllfyn*lfllifi*t*iftnfinskrngnswdnfkisrndtmiesnqtfi**df
lcripaifieyfittntlnhhsss*NIQRIANSHSNSTTKSTTNKIANHIYTFFQFILIR
S---

---s*qqciqhnld*dfvtylelve*slifqilllqisillqqsililnn*hfllklifl
khlilnlncfyyfllkfyfdfrf**ycleyhfwklncyyy*yyyyyysyyyclnliiyyy
lilliflysnyclhycsie*lrn*qycyhf*dfykylrfwmvyrccyyflsil*ssf*nq
nysfilkegk

Frame B:
fffffyyyfiinyfc*ylfepkslqis*takematvgttlk*agmip**katkpsfdkif
fvasqpfl*stllppip*iiilllktskg*qtvivtaplrapqtksqiiftpffnsfsse
---

---HSSNASNITLTKIL*htlnllnnr*sfkscccrsrycssnrs*y*iidiff*n*ff*
ni*f*i*ivfiisf*nfilifvfnniv*ntifgn*iviiiniiiiiiliiiv*i**fiii
*fy*fffiqiivyiivqlnd*gisnivtifetfisi*gfgwsigvaiifcrffkalfkir
tihly*rrgr

Frame C:
ffffftiil*liifvdiylnlnlykfhkqqkkwqqlgql*nkqe*yhdrkqpnlhlirfs
lshpshfyrvlyyhqylessffflkhpkdskqs**qhh*ehhkqnrksylhlfsihshqk
---

---iaamhpt*p*lrfcdip*tc*iivnlsnpavadldiapaidpdtk*ltfsfeidffe
tsnfefelfllfpfkilf*fsfliilfripfleiklllllilllllfllllfkfnnlllf
dfinfslfkllftllfn*mikelaillpflrll*vfkvldgl*vlllfsvdslklflkse
lfiyikggee

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI504 (SLI504Q) /CSM/SL/SLI5-A/SLI504Q.Seq.d/                        954   0.0
VSB740 (VSB740Q) /CSM/VS/VSB7-B/VSB740Q.Seq.d/                        686   0.0
SSD392 (SSD392Q) /CSM/SS/SSD3-D/SSD392Q.Seq.d/                        686   0.0
SSA115 (SSA115Q) /CSM/SS/SSA1-A/SSA115Q.Seq.d/                        686   0.0
VHE621 (VHE621Q) /CSM/VH/VHE6-A/VHE621Q.Seq.d/                         36   0.93
SSL364 (SSL364Q) /CSM/SS/SSL3-C/SSL364Q.Seq.d/                         36   0.93
SSL267 (SSL267Q) /CSM/SS/SSL2-C/SSL267Q.Seq.d/                         36   0.93
SFK488 (SFK488Q) /CSM/SF/SFK4-D/SFK488Q.Seq.d/                         36   0.93
SFE412 (SFE412Q) /CSM/SF/SFE4-A/SFE412Q.Seq.d/                         36   0.93
CHI166 (CHI166Q) /CSM/CH/CHI1-C/CHI166Q.Seq.d/                         36   0.93

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   686  0.0  4
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           42  0.026  2
BU023320|BU023320.1 QHF10I12.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHF10I12, mRNA sequence.    50  0.049  1
AC113929|AC113929.5 Homo sapiens chromosome 3 clone RP11-372O2, *** SEQUENCING IN PROGRESS ***, 44 unordered pieces.    38  0.19  6
AC125181|AC125181.4 Mus musculus chromosome 8 clone RP23-324L6, complete sequence.    46  0.24  4
BX294131|BX294131.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-254O18.    34  0.38  5
AX251274|AX251274.1 Sequence 242 from Patent WO0168912.           38  0.59  3
AX346880|AX346880.1 Sequence 1951 from Patent WO0200928.          42  0.68  2
AC021214|AC021214.3 Homo sapiens chromosome UL clone RP11-497F24, WORKING DRAFT SEQUENCE, 13 unordered pieces.    38  0.71  2
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          46  0.77  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY062478_1(AY062478|pid:none) Arabidopsis thaliana putative prot...    82   3e-14
AL132960_24(AL132960|pid:none) Arabidopsis thaliana DNA chromoso...    82   3e-14
AK176255_1(AK176255|pid:none) Arabidopsis thaliana mRNA for mito...    80   1e-13
EU952718_1(EU952718|pid:none) Zea mays clone 1287090 unknown mRNA.     78   4e-13
AP002483_17(AP002483|pid:none) Oryza sativa Japonica Group genom...    76   1e-12
CR380956_62(CR380956|pid:none) Candida glabrata strain CBS138 ch...    76   1e-12
EF085774_1(EF085774|pid:none) Picea sitchensis clone WS02812_A20...    75   4e-12
AC135208_15(AC135208|pid:none) Oryza sativa (japonica cultivar-g...    74   5e-12
(Q12251) RecName: Full=Uncharacterized mitochondrial carrier YPR...    74   9e-12
AP007171_812(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...    73   1e-11

 psg: 0.69  gvh: 0.54  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.66  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: nuclear

>> prediction for SLI504 is mit

>SLI504F.Seq
TTTTTTTTTTTTTTTTTACTATTATTTTATAATTAATTATTTTTGTTGATATTTATTTGA
ACCTAAATCTTTACAAATTTCATAAACAGCAAAAGAAATGGCAACAGTTGGGACAACTTT
AAAATAAGCAGGAATGATACCATGATAGAAAGCAACCAAACCTTCATTTGATAAGATTTT
CTTTGTCGCATCCCAGCCATTTTTATAGAGTACTTTATTACCACCAATACCTTGAATCAT
CATTCTTCTTCTTAAAACATCCAAAGGATAGCAAACAGTCATAGTAACAGCACCACTAAG
AGCACCACAAACAAAATCGCAAATCATATTTACACCTTTTTTCAATTCATTCTCATCAGA
AGC----------

>SLI504Z.Seq
----------TCATAGCAGCAATGCATCCAACATAACCTTGACTAAGATTTTGTGACATA
CCTTGAACTTGTTGAATAATCGTTAATCTTTCAAATCCTGCTGTTGCAGATCTCGATATT
GCTCCAGCAATCGATCCTGATACTAAATAATTGACATTTTCTTTTGAAATTGATTTTTTT
GAAACATCTAATTTTGAATTTGAATTGTTTTTATTATTTCCTTTTAAAATTTTATTTTGA
TTTTCGTTTTTAATAATATTGTTTAGAATACCATTTTTGGAAATTAAATTGTTATTATTA
TTAATATTATTATTATTATTATTCTTATTATTATTGTTTAAATTTAATAATTTATTATTA
TTTGATTTTATTAATTTTTCTTTATTCAAATTATTGTTTACATTATTGTTCAATTGAATG
ATTAAGGAATTAGCAATATTGTTACCATTTTTGAGACTTTTATAAGTATTTAAGGTTTTG
GATGGTCTATAGGTGTTGCTATTATTTTCTGTCGATTCTTTAAAGCTCTTTTTAAAATCA
GAACTATTCATTTATATTAAAGGAGGGGAAGAG

>SLI504P.Seq
TTTTTTTTTTTTTTTTTACTATTATTTTATAATTAATTATTTTTGTTGATATTTATTTGA
ACCTAAATCTTTACAAATTTCATAAACAGCAAAAGAAATGGCAACAGTTGGGACAACTTT
AAAATAAGCAGGAATGATACCATGATAGAAAGCAACCAAACCTTCATTTGATAAGATTTT
CTTTGTCGCATCCCAGCCATTTTTATAGAGTACTTTATTACCACCAATACCTTGAATCAT
CATTCTTCTTCTTAAAACATCCAAAGGATAGCAAACAGTCATAGTAACAGCACCACTAAG
AGCACCACAAACAAAATCGCAAATCATATTTACACCTTTTTTCAATTCATTCTCATCAGA
AGC----------TCATAGCAGCAATGCATCCAACATAACCTTGACTAAGATTTTGTGAC
ATACCTTGAACTTGTTGAATAATCGTTAATCTTTCAAATCCTGCTGTTGCAGATCTCGAT
ATTGCTCCAGCAATCGATCCTGATACTAAATAATTGACATTTTCTTTTGAAATTGATTTT
TTTGAAACATCTAATTTTGAATTTGAATTGTTTTTATTATTTCCTTTTAAAATTTTATTT
TGATTTTCGTTTTTAATAATATTGTTTAGAATACCATTTTTGGAAATTAAATTGTTATTA
TTATTAATATTATTATTATTATTATTCTTATTATTATTGTTTAAATTTAATAATTTATTA
TTATTTGATTTTATTAATTTTTCTTTATTCAAATTATTGTTTACATTATTGTTCAATTGA
ATGATTAAGGAATTAGCAATATTGTTACCATTTTTGAGACTTTTATAAGTATTTAAGGTT
TTGGATGGTCTATAGGTGTTGCTATTATTTTCTGTCGATTCTTTAAAGCTCTTTTTAAAA
TCAGAACTATTCATTTATATTAAAGGAGGGGAAGAG