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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI455
Library SL
(Link to library)
Clone ID SLI455
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16372-1
Original site URL
Representative seq. ID SLI455Z
(Link to Original site)
Representative DNA sequence 
>SLI455 (SLI455Q) /CSM/SL/SLI4-C/SLI455Q.Seq.d/
XXXXXXXXXXGTATAGTAACAACTGTTAAACGTCTCAGAGGCCGTCCTCTTAAGATACCA
ATTGTTAATAAACCTCCTTTAAAATCACATTCTAAACCATCCAAATCACCTCTCAAATCA
ACATCCAAATCACCTCTCAAATCAACATCCATTTCACCTTCCAATTCACCATTTAAATCA
CCATTTAAATCACCTTCCAAATCACCATTTAAATTACCTTCCAAATCACCATCCATTTCA
CCTTCCAATTCACCATTTAAATCACCTTCCAATTCACCATTTAAATCACCATTTAAATCA
CCTTCCAAATCACCATCAATAGGAAAAATCGGTAATGTGATACCTTCAAAAAAAGTTGCA
AAAACAAAGTCAACAAGGACACAAAAATTAGAACTTGATTTGGTTGCAATTAATAGAAGG
GGGTATGGGGAAATTAGAAAATAAAAACAAGTGGCCAAATCAAAAAAACAAAAAAAACAC
AAATCAACACAAAAAATTAA
sequence update 1998. 8.24
Translated Amino Acid sequence 
---IVTTVKRLRGRPLKIPIVNKPPLKSHSKPSKSPLKSTSKSPLKSTSISPSNSPFKSP
FKSPSKSPFKLPSKSPSISPSNSPFKSPSNSPFKSPFKSPSKSPSIGKIGNVIPSKKVAK
TKSTRTQKLELDLVAINRRGYGEIRK*kqvakskkqkkhkstqki
Translated Amino Acid sequence (All Frames) 
Frame A:
---ysnnc*tsqrpss*dtnc**tsfkitf*tiqitsqiniqitsqinihftfqfti*it
i*itfqiti*itfqitihftfqfti*itfqfti*iti*itfqitinrknr*cdtfkksck
nkvnkdtkirt*fgcn**kgvwgn*kiktsgqikktkktqintkn*


Frame B:
---IVTTVKRLRGRPLKIPIVNKPPLKSHSKPSKSPLKSTSKSPLKSTSISPSNSPFKSP
FKSPSKSPFKLPSKSPSISPSNSPFKSPSNSPFKSPFKSPSKSPSIGKIGNVIPSKKVAK
TKSTRTQKLELDLVAINRRGYGEIRK*kqvakskkqkkhkstqki


Frame C:
---**qllnvseavllryqllinll*nhilnhpnhlsnqhpnhlsnqhpfhlpihhlnhh
lnhlpnhhlnylpnhhpfhlpihhlnhlpihhlnhhlnhlpnhhq*eksvm*ylqkklqk
qsqqghkn*nliwlqlieggmgklenknkwpnqknkkntnqhkkl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI455 (SLI455Q) /CSM/SL/SLI4-C/SLI455Q.Seq.d/                        841   0.0
VHC812 (VHC812Q) /CSM/VH/VHC8-A/VHC812Q.Seq.d/                        785   0.0
SFE560 (SFE560Q) /CSM/SF/SFE5-C/SFE560Q.Seq.d/                        785   0.0
AHP538 (AHP538Q) /CSM/AH/AHP5-B/AHP538Q.Seq.d/                        785   0.0
AHP359 (AHP359Q) /CSM/AH/AHP3-C/AHP359Q.Seq.d/                        785   0.0
AHM342 (AHM342Q) /CSM/AH/AHM3-B/AHM342Q.Seq.d/                        785   0.0
AFO751 (AFO751Q) /CSM/AF/AFO7-C/AFO751Q.Seq.d/                        785   0.0
AFK768 (AFK768Q) /CSM/AF/AFK7-C/AFK768Q.Seq.d/                        785   0.0
AFF133 (AFF133Q) /CSM/AF/AFF1-B/AFF133Q.Seq.d/                        785   0.0
AFC683 (AFC683Q) /CSM/AF/AFC6-D/AFC683Q.Seq.d/                        773   0.0
own update 2003. 6.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU053358) Dictyostelium discoideum slug cDNA, clone SLI455.      666   0.0    2
(BJ438015) Dictyostelium discoideum cDNA clone:ddv36h04, 3' ...   626   0.0    2
(BJ354956) Dictyostelium discoideum cDNA clone:dda55d11, 3' ...   626   0.0    2
(BJ346316) Dictyostelium discoideum cDNA clone:dda30f13, 3' ...   626   0.0    2
(BJ397999) Dictyostelium discoideum cDNA clone:dds10g15, 3' ...   626   0.0    2
(BJ339992) Dictyostelium discoideum cDNA clone:dda11a09, 3' ...   626   0.0    2
(BJ356823) Dictyostelium discoideum cDNA clone:dda61f15, 3' ...   626   0.0    2
(BJ357078) Dictyostelium discoideum cDNA clone:dda62k09, 3' ...   626   0.0    2
(BJ356888) Dictyostelium discoideum cDNA clone:dda61c24, 3' ...   650   0.0    2
(BJ341469) Dictyostelium discoideum cDNA clone:dda6e22, 3' e...   615   0.0    2
dna update 2009. 6.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57081_2(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...    35   0.73
U57081_1(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...    35   0.73
AE010299_2794(AE010299|pid:none) Methanosarcina acetivorans str....    32   8.1
protein update 2009. 1.24
PSORT 

 psg: 0.73  gvh: 0.40  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.91  mip: 0.20
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 12.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SLI455 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLI455Z
3' end seq. 
>SLI455Z.Seq
----------GTATAGTAACAACTGTTAAACGTCTCAGAGGCCGTCCTCTTAAGATACCA
ATTGTTAATAAACCTCCTTTAAAATCACATTCTAAACCATCCAAATCACCTCTCAAATCA
ACATCCAAATCACCTCTCAAATCAACATCCATTTCACCTTCCAATTCACCATTTAAATCA
CCATTTAAATCACCTTCCAAATCACCATTTAAATTACCTTCCAAATCACCATCCATTTCA
CCTTCCAATTCACCATTTAAATCACCTTCCAATTCACCATTTAAATCACCATTTAAATCA
CCTTCCAAATCACCATCAATAGGAAAAATCGGTAATGTGATACCTTCAAAAAAAGTTGCA
AAAACAAAGTCAACAAGGACACAAAAATTAGAACTTGATTTGGTTGCAATTAATAGAAGG
GGGTATGGGGAAATTAGAAAATAAAAACAAGTGGCCAAATCAAAAAAACAAAAAAAACAC
AAATCAACACAAAAAATTAA
Length of 3' end seq. 490
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -