SLI368
Library SL
(Link to library)
Clone ID SLI368
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16327-1
Original site URL
Representative seq. ID SLI368Z
(Link to Original site)
Representative DNA sequence
>SLI368 (SLI368Q) /CSM/SL/SLI3-C/SLI368Q.Seq.d/
XXXXXXXXXXTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTATTAATTAATTTATTTAATTA
TTTATTTAATTTTATTTTTTTTTGAAAAAATAAAAATAAAAATAAAAATAATTATAAATT
TAAAAAAAA
sequence update 1998. 8.23
Translated Amino Acid sequence
---FFFFFFFFFFFFFFFFFFFFFFFFFLFFLLINLFNYLFNFIFF*knknknknnykfk
k


Translated Amino Acid sequence (All Frames)
Frame A:
---ffffffffffffffffffffffffffyffy*liyliiylilfffekikikikiiinl
kk


Frame B:
---ffffffffffffffffffffffffffiffin*fi*lfi*fyfflkk*k*k*k*l*i*
kk


Frame C:
---FFFFFFFFFFFFFFFFFFFFFFFFFLFFLLINLFNYLFNFIFF*knknknknnykfk
k


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 189
length of database: 80,480,566
effective HSP length: 17
effective length of query: 172
effective length of database: 78,821,179
effective search space: 13557242788
effective search space used: 13557242788
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

[blastall] WARNING: [000.000] SetUpBlastSearch failed.
[blastall] ERROR: [000.000] Blast: No valid letters to be indexed

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003. 7. 5
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 2,805,448
protein update 2009. 6. 5
PSORT

psg: 1.06 gvh: 0.62 alm: 0.12 top: 0.47 tms: 0.07 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for SLI368 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLI368Z
3' end seq.
>SLI368Z.Seq
----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTATTAATTAATTTATTTAATTA
TTTATTTAATTTTATTTTTTTTTGAAAAAATAAAAATAAAAATAAAAATAATTATAAATT
TAAAAAAAA
Length of 3' end seq. 179
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -