>SLI338 (SLI338Q) /CSM/SL/SLI3-B/SLI338Q.Seq.d/
CTCCACACAAGAGGTAGATTTCCAAAAGAAACAAGCACGTCAAAAAGAGGAGGAGGATGA
TATCTTACTCACTCATCAAAAGGAATCATTTAAAAGACTTCAAGATAAACAACAAAATAT
CATTCGTGATATTGAGGAACATTGTAAACTACAAAGACAACAATTTGAAACAGAATACAC
TTTCAACGAGGAGGAGATGTTGATCGAACATTATAGACAAXXXXXXXXXXCCAAGGAAAC
TCAATCTCTTCAAGCAGAGTTGGCAAAGGCTCAAGAGAAACTTCAATCTGATCAACAAAA
ATTACTTCATGATCTCACTGAAGAACAAAAGAAATCGAAATTAAAATTAAAATCTGAATC
ACCATCTTGTAAAGAGAATCCATTACATATGAAAAAGAAATCAACTGGTACAACTCCACC
CTCAACAAGTTCAAATCAAAAAACTTTAAATAATTCAAATGGTGCTTCTTCCAATGGTCA
TCATCATCATCATCATCAAAGCGCTGGTGTAGGTGGTAGTGGTGGTACCATTAGTAGTTC
TCATAATACCCCTGTATTACCTCATAATATGAAACATCAAAGATCTTTTTCAACTAGTTT
ACCTTCTTTTAAATTTGATAATCAAGATTAAATATTTAATAATATTCAATATTCATTCAT
TAATTCATTCATTATTTTATTATTTAAAAAATTAAGTTTTATAAAAATAATAATAATAAT
TAAAATAAATAAATTAATAAATAAATAATAAATAATAAATAATAATAATAAT

STQEVDFQKKQARQKEEEDDILLTHQKESFKRLQDKQQNIIRDIEEHCKLQRQQFETEYT
FNEEEMLIEHYRQ---

---KETQSLQAELAKAQEKLQSDQQKLLHDLTEEQKKSKLKLKSESPSCKENPLHMKKKS
TGTTPPSTSSNQKTLNNSNGASSNGHHHHHHQSAGVGGSGGTISSSHNTPVLPHNMKHQR
SFSTSLPSFKFDNQD*ifnniqysfinsfiillfkklsfikiiiiikinklink**iinn
nnn

Frame A:
lhtrgrfpketstskrggg*ylthsskgii*ktsr*ttkyhs*y*gtl*ttktti*nrih
fqrggdvdrtl*t---

---prklnlfkqswqrlkrnfnlinknyfmislknkrnrn*n*nlnhhlvkrihyi*krn
qlvqlhpqqvqikkl*iiqmvllpmviiiiiikalv*vvvvvplvvliiplyylii*nik
dlfqlvylllnliikikyliifnihslihslfyylkn*vl*k****lk*in**innk**i
iii

Frame B:
STQEVDFQKKQARQKEEEDDILLTHQKESFKRLQDKQQNIIRDIEEHCKLQRQQFETEYT
FNEEEMLIEHYRQ---

---qgnsisssrvgkgsretsi*stkits*sh*rtkeieikiki*itil*resityekei
nwynstlnkfksknfk*fkwcffqwssssssskrwcrw*wwyh**fs*ypcits*yetsk
iffn*ftff*i**srlni**ysifih*fihyfii*kikfyknnnnn*nk*ink*iinnk*
***

Frame C:
phkr*iskrnkhvkkrrrmisyslikrnhlkdfkinnkisfvilrnivnykdnnlkqntl
strrrc*sniid---

---KETQSLQAELAKAQEKLQSDQQKLLHDLTEEQKKSKLKLKSESPSCKENPLHMKKKS
TGTTPPSTSSNQKTLNNSNGASSNGHHHHHHQSAGVGGSGGTISSSHNTPVLPHNMKHQR
SFSTSLPSFKFDNQD*ifnniqysfinsfiillfkklsfikiiiiikinklink**iinn
nnn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI338 (SLI338Q) /CSM/SL/SLI3-B/SLI338Q.Seq.d/                        886   0.0
SHL116 (SHL116Q) /CSM/SH/SHL1-A/SHL116Q.Seq.d/                        490   e-137
CHP179 (CHP179Q) /CSM/CH/CHP1-D/CHP179Q.Seq.d/                        490   e-137
CHM822 (CHM822Q) /CSM/CH/CHM8-A/CHM822Q.Seq.d/                        490   e-137
AHO191 (AHO191Q) /CSM/AH/AHO1-D/AHO191Q.Seq.d/                        490   e-137
CHB832 (CHB832Q) /CSM/CH/CHB8-B/CHB832Q.Seq.d/                        436   e-121
CHB732 (CHB732Q) /CSM/CH/CHB7-B/CHB732Q.Seq.d/                        436   e-121
CHH174 (CHH174Q) /CSM/CH/CHH1-D/CHH174Q.Seq.d/                        422   e-117
VSC176 (VSC176Q) /CSM/VS/VSC1-D/VSC176Q.Seq.d/                        252   7e-66
SSC102 (SSC102Q) /CSM/SS/SSC1-A/SSC102Q.Seq.d/                         42   0.012

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    40  0.038  4
AJ534950|AJ534950.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-3  (adprt-3 gene).    34  0.13  4
AL591599|AL591599.5 Human DNA sequence from clone RP11-519I15 on chromosome 6.    44  0.61  2
BZ029223|BZ029223.1 oej68h05.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46  0.64  1
AC096555|AC096555.1 Homo sapiens chromosome 2 clone RP11-78N15, complete sequence.    40  1.4  3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38  1.8  8
BX537280|BX537280.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-228C11.    40  1.9  2
AC117381|AC117381.5 Homo sapiens 3 BAC RP11-783D3 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36  2.2  3
AL353754|AL353754.10 Human DNA sequence from clone RP11-401E9 on chromosome 10.    44  2.3  4
AX251453|AX251453.1 Sequence 421 from Patent WO0168912.           40  2.5  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Y06) RecName: Full=Probable cyclin-dependent serine/threonin...    43   0.009
AE017194_1384(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    43   0.012
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    42   0.016
EU930308_1(EU930308|pid:none) Simulium vittatum clone SV-75 hypo...    42   0.016
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    42   0.021
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik...    41   0.036
AY166677_1(AY166677|pid:none) Plasmodium reichenowi reticulocyte...    41   0.036
EU930276_1(EU930276|pid:none) Simulium vittatum clone SV-38 hypo...    41   0.047
(P22793) RecName: Full=Trichohyalin;  &A40691(A40691;A34209;S326...    40   0.061
AM398681_2358(AM398681|pid:none) Flavobacterium psychrophilum JI...    40   0.061

 psg: 0.21  gvh: 0.18  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SLI338 is nuc

>SLI338F.Seq
CTCCACACAAGAGGTAGATTTCCAAAAGAAACAAGCACGTCAAAAAGAGGAGGAGGATGA
TATCTTACTCACTCATCAAAAGGAATCATTTAAAAGACTTCAAGATAAACAACAAAATAT
CATTCGTGATATTGAGGAACATTGTAAACTACAAAGACAACAATTTGAAACAGAATACAC
TTTCAACGAGGAGGAGATGTTGATCGAACATTATAGACAA----------

>SLI338Z.Seq
----------CCAAGGAAACTCAATCTCTTCAAGCAGAGTTGGCAAAGGCTCAAGAGAAA
CTTCAATCTGATCAACAAAAATTACTTCATGATCTCACTGAAGAACAAAAGAAATCGAAA
TTAAAATTAAAATCTGAATCACCATCTTGTAAAGAGAATCCATTACATATGAAAAAGAAA
TCAACTGGTACAACTCCACCCTCAACAAGTTCAAATCAAAAAACTTTAAATAATTCAAAT
GGTGCTTCTTCCAATGGTCATCATCATCATCATCATCAAAGCGCTGGTGTAGGTGGTAGT
GGTGGTACCATTAGTAGTTCTCATAATACCCCTGTATTACCTCATAATATGAAACATCAA
AGATCTTTTTCAACTAGTTTACCTTCTTTTAAATTTGATAATCAAGATTAAATATTTAAT
AATATTCAATATTCATTCATTAATTCATTCATTATTTTATTATTTAAAAAATTAAGTTTT
ATAAAAATAATAATAATAATTAAAATAAATAAATTAATAAATAAATAATAAATAATAAAT
AATAATAATAAT

>SLI338P.Seq
CTCCACACAAGAGGTAGATTTCCAAAAGAAACAAGCACGTCAAAAAGAGGAGGAGGATGA
TATCTTACTCACTCATCAAAAGGAATCATTTAAAAGACTTCAAGATAAACAACAAAATAT
CATTCGTGATATTGAGGAACATTGTAAACTACAAAGACAACAATTTGAAACAGAATACAC
TTTCAACGAGGAGGAGATGTTGATCGAACATTATAGACAA----------CCAAGGAAAC
TCAATCTCTTCAAGCAGAGTTGGCAAAGGCTCAAGAGAAACTTCAATCTGATCAACAAAA
ATTACTTCATGATCTCACTGAAGAACAAAAGAAATCGAAATTAAAATTAAAATCTGAATC
ACCATCTTGTAAAGAGAATCCATTACATATGAAAAAGAAATCAACTGGTACAACTCCACC
CTCAACAAGTTCAAATCAAAAAACTTTAAATAATTCAAATGGTGCTTCTTCCAATGGTCA
TCATCATCATCATCATCAAAGCGCTGGTGTAGGTGGTAGTGGTGGTACCATTAGTAGTTC
TCATAATACCCCTGTATTACCTCATAATATGAAACATCAAAGATCTTTTTCAACTAGTTT
ACCTTCTTTTAAATTTGATAATCAAGATTAAATATTTAATAATATTCAATATTCATTCAT
TAATTCATTCATTATTTTATTATTTAAAAAATTAAGTTTTATAAAAATAATAATAATAAT
TAAAATAAATAAATTAATAAATAAATAATAAATAATAAATAATAATAATAAT