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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI306
Library SL
(Link to library)
Clone ID SLI306
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12095-1
Original site URL
Representative seq. ID SLI306P
(Link to Original site)
Representative DNA sequence 
>SLI306 (SLI306Q) /CSM/SL/SLI3-A/SLI306Q.Seq.d/
AATCGATGAAACTAAAAGAACCAATAAATTGATAGATTATTTCGAAGAGAAGGCAAAAAT
TCAACAAGATAAAGTAAAACAAAGAAACGATCAACGTGTAAAGAAATTAGAGGATTTGAA
AGGCGGATTCGCAAGACAGAATTCTCACAATTCCGAGCAGTTAAAGAAAGAGATGGAACG
TATGTCTAGTTTAAATAAAGAAAAGATTGAGCTATCTTCAAAAGATTCAGATTTACAACA
CCAATATCAACAAGAGAGAAAAGAAAAGAAGAXXXXXXXXXXTGGAAACTAAACAATTCT
TGGCAAATCAAAAACTTCAAGATAGAATTGACCAACAGAAACAATTGGAACAACAAAGAA
TTGATCGTGATAAAGAGTTGAGATTATTGAATGAGAAATTGGAGCAATTGGAAACCGACT
CTGAAATCTCTGATACTCCACTACAAAAACTTCGTGAAGAAATTAGATCTTTGAAAATTC
AAGCTGAAAAAGATAAAGAAGAATGTGAAGATTCCCAAGAATTAGTACAACAGATGGAAT
CTGATATCAAAAGATTAGAATATGAAGTATTGGATGAATCAAGTGAAGCCTCCTTACATC
AAAGACAACTTGAAATACTTGAAAAGAAATTACGTGAGGCTGAAGATGAATTACACTCTC
ATAATTTACAATTACAACAACAACAAATAGAATTTGAACAAAAAATTCAAAAAAAAAAAA
AA
sequence update 1999. 2.23
Translated Amino Acid sequence 
IDETKRTNKLIDYFEEKAKIQQDKVKQRNDQRVKKLEDLKGGFARQNSHNSEQLKKEMER
MSSLNKEKIELSSKDSDLQHQYQQERKEKK---

---ETKQFLANQKLQDRIDQQKQLEQQRIDRDKELRLLNEKLEQLETDSEISDTPLQKLR
EEIRSLKIQAEKDKEECEDSQELVQQMESDIKRLEYEVLDESSEASLHQRQLEILEKKLR
EAEDELHSHNLQLQQQQIEFEQKIQKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
nr*n*knq*idrlfrregknstr*sktkkrstckeirgferrirktefsqfravkerdgt
yv*fk*rkd*aifkrfrfttpistrekrke---

---wklnnswqiknfkieltnrnnwnnkeliviks*dy*mrnwsnwkptlkslilhyknf
vkkldl*kfklkkikknvkipkn*ynrwnliskd*nmkywmnqvkppyikdnlkylkrny
vrlkmnytliiynynnnk*nlnkkfkkkk

Frame B:
IDETKRTNKLIDYFEEKAKIQQDKVKQRNDQRVKKLEDLKGGFARQNSHNSEQLKKEMER
MSSLNKEKIELSSKDSDLQHQYQQERKEKK---

---gn*tilgksktsr*n*ptetigttkn*s**rveiie*eigaignrl*nl*ysttkts
*rn*ifenss*kr*rrm*rfpristtdgi*yqkiri*sig*ik*slltsktt*nt*keit
*g*r*itls*ftittttnri*tknskkkk

Frame C:
smklkepin**iiskrrqkfnkik*nketinv*rn*ri*kadsqdriltipss*rkrwnv
clv*ikkrlsylqkiqiyntninkrekkrr---

---ETKQFLANQKLQDRIDQQKQLEQQRIDRDKELRLLNEKLEQLETDSEISDTPLQKLR
EEIRSLKIQAEKDKEECEDSQELVQQMESDIKRLEYEVLDESSEASLHQRQLEILEKKLR
EAEDELHSHNLQLQQQQIEFEQKIQKKKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI306 (SLI306Q) /CSM/SL/SLI3-A/SLI306Q.Seq.d/                       1326   0.0
SHH340 (SHH340Q) /CSM/SH/SHH3-B/SHH340Q.Seq.d/                        817   0.0
SHH312 (SHH312Q) /CSM/SH/SHH3-A/SHH312Q.Seq.d/                        817   0.0
SHH338 (SHH338Q) /CSM/SH/SHH3-B/SHH338Q.Seq.d/                        763   0.0
VHP275 (VHP275Q) /CSM/VH/VHP2-D/VHP275Q.Seq.d/                        577   e-164
VHC694 (VHC694Q) /CSM/VH/VHC6-D/VHC694Q.Seq.d/                        539   e-152
SSJ191 (SSJ191Q) /CSM/SS/SSJ1-D/SSJ191Q.Seq.d/                        283   2e-75
FC-BD07 (FC-BD07Q) /CSM/FC/FC-BD/FC-BD07Q.Seq.d/                       48   2e-04
CHQ264 (CHQ264Q) /CSM/CH/CHQ2-C/CHQ264Q.Seq.d/                         48   2e-04
CHI561 (CHI561Q) /CSM/CH/CHI5-C/CHI561Q.Seq.d/                         48   2e-04
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB102780|AB102780.1 Dictyostelium discoideum K4 mRNA for kinesin-related protein K4, complete cds.    36  9e-04  6
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38  0.002  9
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38  0.007  9
AC117611|AC117611.1 Mus musculus clone RP23-103L9, LOW-PASS SEQUENCE SAMPLING.    48  0.018  4
AC135035|AC135035.2 Rattus norvegicus clone CH230-518N2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46  0.029  6
AC122535|AC122535.2 Mus musculus chromosome UNK clone RP24-539K4, WORKING DRAFT SEQUENCE, 12 unordered pieces.    38  0.14  4
AC127993|AC127993.3 Rattus norvegicus clone CH230-398N19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  0.19  5
AF012943|AF012943.1 Dictyostelium discoideum RblA (rblA) gene, partial cds.    32  0.27  3
AC145562|AC145562.1 Mus musculus chromosome UNK clone RP24-67L21, *** SEQUENCING IN PROGRESS ***, 32 unordered pieces.    34  0.35  6
AL161786|AL161786.12 Human DNA sequence from clone RP11-344L17 on chromosome 9.    38  0.37  4
dna update 2003. 8.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    63   1e-08
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    62   2e-08
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    62   2e-08
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir...    60   5e-08
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B...    53   7e-08
(P13540) RecName: Full=Myosin-7; AltName: Full=Myosin heavy chai...    44   2e-07
AL844508_36(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    58   3e-07
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    57   4e-07
A37102(A37102;S12733;A94224;B28908;A24997;A27858;I54254;) myosin...    45   6e-07
(P04461) RecName: Full=Myosin-7; AltName: Full=Myosin heavy chai...    44   6e-07
protein update 2009. 6. 5
PSORT 

 psg: 0.49  gvh: 0.25  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial

>> prediction for SLI306 is nuc
5' end seq. ID SLI306F
5' end seq. 
>SLI306F.Seq
AATCGATGAAACTAAAAGAACCAATAAATTGATAGATTATTTCGAAGAGAAGGCAAAAAT
TCAACAAGATAAAGTAAAACAAAGAAACGATCAACGTGTAAAGAAATTAGAGGATTTGAA
AGGCGGATTCGCAAGACAGAATTCTCACAATTCCGAGCAGTTAAAGAAAGAGATGGAACG
TATGTCTAGTTTAAATAAAGAAAAGATTGAGCTATCTTCAAAAGATTCAGATTTACAACA
CCAATATCAACAAGAGAGAAAAGAAAAGAAGA----------
Length of 5' end seq. 272
3' end seq. ID SLI306Z
3' end seq. 
>SLI306Z.Seq
----------TGGAAACTAAACAATTCTTGGCAAATCAAAAACTTCAAGATAGAATTGAC
CAACAGAAACAATTGGAACAACAAAGAATTGATCGTGATAAAGAGTTGAGATTATTGAAT
GAGAAATTGGAGCAATTGGAAACCGACTCTGAAATCTCTGATACTCCACTACAAAAACTT
CGTGAAGAAATTAGATCTTTGAAAATTCAAGCTGAAAAAGATAAAGAAGAATGTGAAGAT
TCCCAAGAATTAGTACAACAGATGGAATCTGATATCAAAAGATTAGAATATGAAGTATTG
GATGAATCAAGTGAAGCCTCCTTACATCAAAGACAACTTGAAATACTTGAAAAGAAATTA
CGTGAGGCTGAAGATGAATTACACTCTCATAATTTACAATTACAACAACAACAAATAGAA
TTTGAACAAAAAATTCAAAAAAAAAAAAAA
Length of 3' end seq. 440
Connected seq. ID SLI306P
Connected seq. 
>SLI306P.Seq
AATCGATGAAACTAAAAGAACCAATAAATTGATAGATTATTTCGAAGAGAAGGCAAAAAT
TCAACAAGATAAAGTAAAACAAAGAAACGATCAACGTGTAAAGAAATTAGAGGATTTGAA
AGGCGGATTCGCAAGACAGAATTCTCACAATTCCGAGCAGTTAAAGAAAGAGATGGAACG
TATGTCTAGTTTAAATAAAGAAAAGATTGAGCTATCTTCAAAAGATTCAGATTTACAACA
CCAATATCAACAAGAGAGAAAAGAAAAGAAGA----------TGGAAACTAAACAATTCT
TGGCAAATCAAAAACTTCAAGATAGAATTGACCAACAGAAACAATTGGAACAACAAAGAA
TTGATCGTGATAAAGAGTTGAGATTATTGAATGAGAAATTGGAGCAATTGGAAACCGACT
CTGAAATCTCTGATACTCCACTACAAAAACTTCGTGAAGAAATTAGATCTTTGAAAATTC
AAGCTGAAAAAGATAAAGAAGAATGTGAAGATTCCCAAGAATTAGTACAACAGATGGAAT
CTGATATCAAAAGATTAGAATATGAAGTATTGGATGAATCAAGTGAAGCCTCCTTACATC
AAAGACAACTTGAAATACTTGAAAAGAAATTACGTGAGGCTGAAGATGAATTACACTCTC
ATAATTTACAATTACAACAACAACAAATAGAATTTGAACAAAAAATTCAAAAAAAAAAAA
AA
Length of connected seq. 712
Full length Seq ID -
Full length Seq. -
Length of full length seq. -